Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32224
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces p...    41   1e-04
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8...    27   2.2  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.7  
SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein S24|Sc...    25   6.7  

>SPAPB2B4.05 |vma5||V-type ATPase subunit C|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 40.7 bits (91), Expect = 1e-04
 Identities = 17/31 (54%), Positives = 23/31 (74%)
 Frame = -3

Query: 301 LVRWLKVNFSECFCAWIHVKALRVFVESVLR 209
           L+R+  + FSE F  WIH+K L V+VES+LR
Sbjct: 284 LLRYASIAFSESFQGWIHLKCLCVYVESILR 314


>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
           Cut8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 262

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = +2

Query: 194 YKKSSPQNGFDEHTQSFNV 250
           +++++PQN F  HT S N+
Sbjct: 229 FQQTNPQNNFHRHTNSMNI 247


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 189 HITKKAHLKTDSTNTRRALTWIQAQK 266
           HI  + + KT   NTRR + W+   K
Sbjct: 52  HILDEIYEKTPFNNTRRRILWLAVLK 77


>SPAC17G6.06 |rps2401|rps24-1, rps24|40S ribosomal protein
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 134

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 438 IIDINHKYVLNISRNERRFSLGDIF 512
           ++DI H    NIS+N+ R  LG ++
Sbjct: 24  VVDILHPGKANISKNDLREKLGQMY 48


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,061,231
Number of Sequences: 5004
Number of extensions: 40871
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)