Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32224
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      30   0.98 
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   4.0  
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)                 28   4.0  
SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 200 KSSPQNGFDEHTQSFNVDPSAEALGEVHLQPSH-QRSLGINTKINN 334
           + S Q  +  H QS  VDP  +   +    P H QRS  ++T++NN
Sbjct: 571 QDSLQAHYTRHQQSLTVDPMGDDNDQQLSSPRHAQRSRKVSTELNN 616


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
 Frame = +3

Query: 366 IIVRTEIS-FENRSENILSHPISRTIIDINHKYV--LNISRNERRFSL 500
           I +R  +S    R +NI S    + + D+  +YV  LNI  N++ FSL
Sbjct: 93  IKIRDVVSNLSERRKNITSKKTGKIMEDVPRRYVIVLNIGTNQKEFSL 140


>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
          Length = 827

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 458 LMIDINDSSTYRMR*NIFGSVFK 390
           L+ DIND + YR+    FG +FK
Sbjct: 282 LVFDINDFNLYRLANGFFGEIFK 304


>SB_51287| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 276

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +3

Query: 195 TKKAHLKTDSTNTRRALTWIQAQKHSEKFTFNHR 296
           T   H  T +T TR   TW    +H   +T  HR
Sbjct: 239 TTTRHRTTWTTTTRHQTTWTTTTRHRTTWTPTHR 272


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,670,090
Number of Sequences: 59808
Number of extensions: 275886
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)