BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32224 (516 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h at... 60 9e-10 AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein... 60 9e-10 U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p... 31 0.65 U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p... 31 0.65 U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p... 31 0.65 Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical pr... 29 2.6 Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical pr... 29 2.6 Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr... 27 6.0 >AC024762-2|AAF59474.3| 384|Caenorhabditis elegans Vacuolar h atpase protein 11, isoforma protein. Length = 384 Score = 60.1 bits (139), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -3 Query: 304 PLVRWLKVNFSECFCAWIHVKALRVFVESVLR 209 PL+RWLK+NF E F A+IH+KALRVFVESVLR Sbjct: 280 PLIRWLKINFGEIFAAYIHIKALRVFVESVLR 311 >AB009567-1|BAA75067.1| 384|Caenorhabditis elegans Vha11 protein protein. Length = 384 Score = 60.1 bits (139), Expect = 9e-10 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = -3 Query: 304 PLVRWLKVNFSECFCAWIHVKALRVFVESVLR 209 PL+RWLK+NF E F A+IH+KALRVFVESVLR Sbjct: 280 PLIRWLKINFGEIFAAYIHIKALRVFVESVLR 311 >U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical protein F35D11.11a protein. Length = 1840 Score = 30.7 bits (66), Expect = 0.65 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287 HL+ D+TN R L +Q Q+H+E F Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184 >U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical protein F35D11.11c protein. Length = 1898 Score = 30.7 bits (66), Expect = 0.65 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287 HL+ D+TN R L +Q Q+H+E F Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184 >U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical protein F35D11.11b protein. Length = 1911 Score = 30.7 bits (66), Expect = 0.65 Identities = 12/27 (44%), Positives = 17/27 (62%) Frame = +3 Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287 HL+ D+TN R L +Q Q+H+E F Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184 >Z81140-4|CAJ55247.1| 463|Caenorhabditis elegans Hypothetical protein W10G6.2b protein. Length = 463 Score = 28.7 bits (61), Expect = 2.6 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 98 QHNFLVKIISTIQN*SRKHTYYILSNFNRMPYYKKSSPQNGFDEHTQSFNVDPSAEALGE 277 +H FLV + + QN ++ Y++L + N + + F E F A ALG Sbjct: 192 KHPFLVSLHFSFQN--KEKLYFVLDHLNGGELFSHLQREKHFSESRSRFYAAEIACALGY 249 Query: 278 VH 283 +H Sbjct: 250 LH 251 >Z81140-3|CAJ55246.1| 453|Caenorhabditis elegans Hypothetical protein W10G6.2a protein. Length = 453 Score = 28.7 bits (61), Expect = 2.6 Identities = 17/62 (27%), Positives = 28/62 (45%) Frame = +2 Query: 98 QHNFLVKIISTIQN*SRKHTYYILSNFNRMPYYKKSSPQNGFDEHTQSFNVDPSAEALGE 277 +H FLV + + QN ++ Y++L + N + + F E F A ALG Sbjct: 182 KHPFLVSLHFSFQN--KEKLYFVLDHLNGGELFSHLQREKHFSESRSRFYAAEIACALGY 239 Query: 278 VH 283 +H Sbjct: 240 LH 241 >Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical protein C34F6.9 protein. Length = 1181 Score = 27.5 bits (58), Expect = 6.0 Identities = 9/34 (26%), Positives = 19/34 (55%) Frame = +2 Query: 203 SSPQNGFDEHTQSFNVDPSAEALGEVHLQPSHQR 304 S + F EH + F+++ + +A+ VH + +R Sbjct: 675 SEDNDDFSEHDEDFDIEQAVQAIDNVHHKAKRER 708 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,280,551 Number of Sequences: 27780 Number of extensions: 223982 Number of successful extensions: 475 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 475 length of database: 12,740,198 effective HSP length: 77 effective length of database: 10,601,138 effective search space used: 996506972 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -