Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32224
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h at...    60   9e-10
AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein...    60   9e-10
U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical p...    31   0.65 
U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical p...    31   0.65 
U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical p...    31   0.65 
Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>AC024762-2|AAF59474.3|  384|Caenorhabditis elegans Vacuolar h
           atpase protein 11, isoforma protein.
          Length = 384

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = -3

Query: 304 PLVRWLKVNFSECFCAWIHVKALRVFVESVLR 209
           PL+RWLK+NF E F A+IH+KALRVFVESVLR
Sbjct: 280 PLIRWLKINFGEIFAAYIHIKALRVFVESVLR 311


>AB009567-1|BAA75067.1|  384|Caenorhabditis elegans Vha11 protein
           protein.
          Length = 384

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 25/32 (78%), Positives = 29/32 (90%)
 Frame = -3

Query: 304 PLVRWLKVNFSECFCAWIHVKALRVFVESVLR 209
           PL+RWLK+NF E F A+IH+KALRVFVESVLR
Sbjct: 280 PLIRWLKINFGEIFAAYIHIKALRVFVESVLR 311


>U29381-14|ABI54346.1| 1840|Caenorhabditis elegans Hypothetical
           protein F35D11.11a protein.
          Length = 1840

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287
           HL+ D+TN  R L  +Q Q+H+E   F
Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184


>U29381-13|ABI54348.1| 1898|Caenorhabditis elegans Hypothetical
           protein F35D11.11c protein.
          Length = 1898

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287
           HL+ D+TN  R L  +Q Q+H+E   F
Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184


>U29381-11|ABI54347.1| 1911|Caenorhabditis elegans Hypothetical
           protein F35D11.11b protein.
          Length = 1911

 Score = 30.7 bits (66), Expect = 0.65
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 207 HLKTDSTNTRRALTWIQAQKHSEKFTF 287
           HL+ D+TN  R L  +Q Q+H+E   F
Sbjct: 158 HLRVDATNLSRQLQQLQQQQHTESMRF 184


>Z81140-4|CAJ55247.1|  463|Caenorhabditis elegans Hypothetical
           protein W10G6.2b protein.
          Length = 463

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 98  QHNFLVKIISTIQN*SRKHTYYILSNFNRMPYYKKSSPQNGFDEHTQSFNVDPSAEALGE 277
           +H FLV +  + QN  ++  Y++L + N    +     +  F E    F     A ALG 
Sbjct: 192 KHPFLVSLHFSFQN--KEKLYFVLDHLNGGELFSHLQREKHFSESRSRFYAAEIACALGY 249

Query: 278 VH 283
           +H
Sbjct: 250 LH 251


>Z81140-3|CAJ55246.1|  453|Caenorhabditis elegans Hypothetical
           protein W10G6.2a protein.
          Length = 453

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/62 (27%), Positives = 28/62 (45%)
 Frame = +2

Query: 98  QHNFLVKIISTIQN*SRKHTYYILSNFNRMPYYKKSSPQNGFDEHTQSFNVDPSAEALGE 277
           +H FLV +  + QN  ++  Y++L + N    +     +  F E    F     A ALG 
Sbjct: 182 KHPFLVSLHFSFQN--KEKLYFVLDHLNGGELFSHLQREKHFSESRSRFYAAEIACALGY 239

Query: 278 VH 283
           +H
Sbjct: 240 LH 241


>Z81479-8|CAB03946.1| 1181|Caenorhabditis elegans Hypothetical
           protein C34F6.9 protein.
          Length = 1181

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/34 (26%), Positives = 19/34 (55%)
 Frame = +2

Query: 203 SSPQNGFDEHTQSFNVDPSAEALGEVHLQPSHQR 304
           S   + F EH + F+++ + +A+  VH +   +R
Sbjct: 675 SEDNDDFSEHDEDFDIEQAVQAIDNVHHKAKRER 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,280,551
Number of Sequences: 27780
Number of extensions: 223982
Number of successful extensions: 475
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)