Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32224
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) ...    36   0.016
At2g35050.1 68415.m04300 protein kinase family protein contains ...    28   4.3  
At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative / as...    27   7.5  

>At1g12840.1 68414.m01491 vacuolar ATP synthase subunit C (VATC) /
           V-ATPase C subunit / vacuolar proton pump C subunit
           (DET3) identical to vacuolar ATP synthase subunit C
           SP:Q9SDS7 from [Arabidopsis thaliana]
          Length = 375

 Score = 35.9 bits (79), Expect = 0.016
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -3

Query: 301 LVRWLKVNFSECFCAWIHVKALRVFVESVLR 209
           L++W   ++ E F +W+H  A+R F ES++R
Sbjct: 278 LLQWCYTSYGEVFSSWMHFCAVRTFAESIMR 308


>At2g35050.1 68415.m04300 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 1257

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 227 EHTQSFNVDPSAEALGEVHLQPSHQRSLGINTKI 328
           EH +    DP  E LG ++ + SH  S  +NT +
Sbjct: 8   EHVRYTAPDPRDEGLGSINQRFSHDSSTNVNTYV 41


>At4g26870.1 68417.m03867 aspartyl-tRNA synthetase, putative /
           aspartate--tRNA ligase, putative simialr to
           aspartate-tRNA ligase (EC 6.1.1.12) from Drosophila
           melanogaster GI:4512034, Homo sapiens SP|P14868, Rattus
           norvegicus SP|P15178; contains Pfam profile PF00152 tRNA
           synthetases class II (D, K and N)
          Length = 532

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 14/50 (28%), Positives = 21/50 (42%)
 Frame = +2

Query: 176 FNRMPYYKKSSPQNGFDEHTQSFNVDPSAEALGEVHLQPSHQRSLGINTK 325
           F  MPY   S+  N FD   +   +   A+ + +  L     R  GI+ K
Sbjct: 432 FYTMPYENDSNYSNSFDVFIRGEEIMSGAQRIHDPELLEKRARECGIDVK 481


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,146
Number of Sequences: 28952
Number of extensions: 194884
Number of successful extensions: 401
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 396
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)