BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32221 (383 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 29 0.25 SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ... 24 9.4 SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 9.4 >SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharomyces pombe|chr 1|||Manual Length = 969 Score = 29.1 bits (62), Expect = 0.25 Identities = 14/34 (41%), Positives = 19/34 (55%) Frame = +1 Query: 106 GNEVEGTAAAHGSASDLETLIERLERVTSRLERL 207 G EVEG GSAS + L++ E + R+E L Sbjct: 808 GLEVEGIYRISGSASQVRVLVDEFENGSIRMEHL 841 >SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr 1|||Manual Length = 481 Score = 23.8 bits (49), Expect = 9.4 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -1 Query: 95 QKYPIVFNEITHSYKHFSSTLNRLFSCT 12 Q YP FN++ + S+L RL CT Sbjct: 145 QNYP-TFNQLNVLHDRLESSLKRLRDCT 171 >SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces pombe|chr 3|||Manual Length = 587 Score = 23.8 bits (49), Expect = 9.4 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = +1 Query: 289 ESLEPIPSDNMSVNGYQD 342 +SL P+P N NGY+D Sbjct: 27 DSLPPLPDANGMSNGYRD 44 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,277,736 Number of Sequences: 5004 Number of extensions: 18830 Number of successful extensions: 59 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 59 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 59 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 126307516 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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