Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32221
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo...    29   0.25 
SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr ...    24   9.4  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    24   9.4  

>SPAC29A4.11 |rga3||GTPase activating protein
           Rga3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 969

 Score = 29.1 bits (62), Expect = 0.25
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 106 GNEVEGTAAAHGSASDLETLIERLERVTSRLERL 207
           G EVEG     GSAS +  L++  E  + R+E L
Sbjct: 808 GLEVEGIYRISGSASQVRVLVDEFENGSIRMEHL 841


>SPAC10F6.11c |||kinase activator |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 481

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -1

Query: 95  QKYPIVFNEITHSYKHFSSTLNRLFSCT 12
           Q YP  FN++   +    S+L RL  CT
Sbjct: 145 QNYP-TFNQLNVLHDRLESSLKRLRDCT 171


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +1

Query: 289 ESLEPIPSDNMSVNGYQD 342
           +SL P+P  N   NGY+D
Sbjct: 27  DSLPPLPDANGMSNGYRD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,277,736
Number of Sequences: 5004
Number of extensions: 18830
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)