Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32221
         (383 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0476 + 34199577-34199638,34200267-34200397,34200535-342006...    30   0.55 
03_05_1108 - 30458827-30459411,30459523-30459615                       30   0.72 
08_01_0083 - 604175-605776                                             27   6.7  
02_04_0256 + 21331396-21332268                                         27   6.7  

>03_06_0476 +
           34199577-34199638,34200267-34200397,34200535-34200698,
           34201007-34201117,34201308-34201387,34201489-34201639,
           34201736-34201829,34202421-34202509,34203672-34203745,
           34203859-34204021,34204445-34204530,34205011-34205094,
           34205186-34205366,34205837-34205887
          Length = 506

 Score = 30.3 bits (65), Expect = 0.55
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = +1

Query: 67  ISLNTIGYFCRFSGNEVEGTAAAHGSASDLETLIERLERVTSRLERLP 210
           +S + I   CRF G E+   AA  G  +  E + E +++  S+++RLP
Sbjct: 457 LSEDLITEMCRFGGAEIHPVAAFIGGVASQEVIKELIKQ--SKIDRLP 502


>03_05_1108 - 30458827-30459411,30459523-30459615
          Length = 225

 Score = 29.9 bits (64), Expect = 0.72
 Identities = 21/47 (44%), Positives = 24/47 (51%)
 Frame = -2

Query: 196 IAR*RVPNARSASRDPMPSREQLRCPRLRYQKNDKNIL*CLMRSLTV 56
           +AR RV  ARSA R   PS   L  PRLR   +   I  C +R L V
Sbjct: 36  LARLRV--ARSAGRRAPPSFRSLSPPRLRTSASTATITPCRLRRLRV 80


>08_01_0083 - 604175-605776
          Length = 533

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 103 SGNEVEGTAAAHGSASDLETLIERLERVTSRLERLP 210
           +  E+ GTA    + S L+ ++  L R   R  RLP
Sbjct: 273 ANEEMAGTATGTATISSLQAVLAHLWRAVCRARRLP 308


>02_04_0256 + 21331396-21332268
          Length = 290

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +1

Query: 127 AAAHGSASDLETLIERLERVTSRLERLPLLR 219
           AAAH S SDL +L+ R +R+ +   RLP +R
Sbjct: 126 AAAH-SPSDLISLLSRAQRLLAHPGRLPPVR 155


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,658,703
Number of Sequences: 37544
Number of extensions: 131429
Number of successful extensions: 466
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)