Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32221
         (383 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64970.1 68418.m08172 mitochondrial substrate carrier family ...    26   7.5  
At1g55080.1 68414.m06291 expressed protein                             26   7.5  
At5g01740.1 68418.m00092 expressed protein wound-inducible prote...    26   9.9  
At3g55770.1 68416.m06197 LIM domain-containing protein similar t...    26   9.9  

>At5g64970.1 68418.m08172 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 428

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +1

Query: 268 LNTPPPQESLEPIPSDNMSVNGYQDLVQGPLRAYL 372
           L+TP  ++ LE +  +   +N +  L  GP+R  L
Sbjct: 309 LHTPEGKKRLEHMKQEGEELNAFDQLELGPMRTLL 343


>At1g55080.1 68414.m06291 expressed protein
          Length = 244

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 265 SLNTPPPQESLEPIPSDNM-SVNGYQDLVQGPLR 363
           SL +PPPQ+++   P   M +    Q LVQ P++
Sbjct: 109 SLQSPPPQQTMVHTPQSMMHTPQQQQQLVQTPVQ 142


>At5g01740.1 68418.m00092 expressed protein wound-inducible protein
           wun1 protein - Solanum tuberosum, PIR:JQ0398
          Length = 162

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 312 GQHECQRISRPCXGSPPR 365
           G H+CQ + R   G PPR
Sbjct: 51  GPHDCQHMMRLLTGEPPR 68


>At3g55770.1 68416.m06197 LIM domain-containing protein similar to
           pollen specific LIM domain protein 1b [Nicotiana
           tabacum] GI:6467905, PGPS/D1 [Petunia x hybrida]
           GI:4105772; contains Pfam profile PF00412: LIM domain
          Length = 199

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 173 RSISVSRSDAEP*AAAVPSTSLPE 102
           +S S+ RS A   AA VP+ S+PE
Sbjct: 175 KSASIKRSAAAAVAAGVPAASVPE 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,765,927
Number of Sequences: 28952
Number of extensions: 100392
Number of successful extensions: 314
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 537681456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)