Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32218
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    54   2e-08
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo...    27   1.3  
SPAPB17E12.10c |||SAM-dependent methyltransferase|Schizosaccharo...    27   2.2  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   3.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.9  

>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 53.6 bits (123), Expect = 2e-08
 Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 8/162 (4%)
 Frame = +3

Query: 24  LLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQN-ADIAED--VRQTAAVLLRRLF 194
           L+  L S DN +R+ AE + ++     +   L+N +   A  +ED  VR    VL RR+ 
Sbjct: 16  LVQGLSSPDNTVRNDAEKSLSSDWISQRADLLLNGLAILAYQSEDPAVRSFCLVLCRRIS 75

Query: 195 -----SAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDG 359
                               +  L+ QLL     +    +R K+CD ++E+AR+  D  G
Sbjct: 76  FRTLPGDSELEVFSSISNESKQSLQSQLLACFVKESVPTVRNKLCDTIAEIARSIYDCQG 135

Query: 360 NNQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQT 485
             +WPE +  +F   ++ D + +E+  R  TS+P +   + +
Sbjct: 136 --EWPELINVIFNAVNSPDESFRESVFRTITSLPRLLSGQDS 175


>SPCC16A11.01 ||SPCC63.15|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 328

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 104 CFCWNVVVCVLCL 66
           CF W++ +C+LCL
Sbjct: 215 CFLWSIYICLLCL 227


>SPAPB17E12.10c |||SAM-dependent
           methyltransferase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +2

Query: 392 VYLCQCARSKHQRSWY*NVYVCTRCIWK 475
           ++LC+   S H RS+  ++ +C +C+ K
Sbjct: 243 IFLCKVLESSHLRSFAEDLSMCFKCVKK 270


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +3

Query: 36  LLSTDNDIRSQAEDAYNNIP-TETKVVHLVNSIQNADIAE 152
           L S  ++IR    D YNNIP ++T    +  +I  A I E
Sbjct: 99  LNSATSNIRLTPSDTYNNIPVSDTNNEEISKNIYGAPILE 138


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 25/134 (18%), Positives = 56/134 (41%)
 Frame = +3

Query: 30   NTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLFSAXXX 209
            N  L + ND   +    ++ + T+  +++L++S     +  D++       +R F+    
Sbjct: 2333 NYPLGSSND---EFSTVFSKVLTDEVMMNLISSCYKFSV--DLQHIMNFTKQRFFTTFYS 2387

Query: 210  XXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQF 389
                     + + + E L      +L  YL++K+C +++       D D  ++   F  +
Sbjct: 2388 LLDQTKLFTRSSNITESLSFK---ELCNYLKKKICYILAWCCTG--DTDAKSR-ERFTHW 2441

Query: 390  MFTCASAQDPNIKE 431
            +   AS   P IK+
Sbjct: 2442 LMQNASVDLPEIKD 2455


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,408
Number of Sequences: 5004
Number of extensions: 39884
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)