Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32218
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038... 77 1e-14
03_02_0441 - 8517501-8517701,8518004-8518139,8519995-8520107,852... 66 2e-11
10_08_0616 + 19286014-19286928 29 2.9
01_07_0224 - 42121011-42122486 28 5.1
01_07_0027 - 40578075-40578437,40578647-40578767,40578852-405789... 27 6.8
11_01_0346 - 2589111-2589220,2589613-2589852,2589956-2590028,259... 27 8.9
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026... 27 8.9
>07_03_0997 -
23203166-23203330,23203627-23203693,23203771-23203862,
23204820-23204956,23205050-23205116,23205212-23205278,
23205356-23205441,23206061-23206153,23206337-23206522,
23207316-23207372,23207455-23207582,23207662-23207731,
23207815-23207950,23208378-23208529,23208606-23208680,
23208765-23208929,23209063-23209128,23209229-23209333,
23209929-23210132,23210462-23211715
Length = 1123
Score = 76.6 bits (180), Expect = 1e-14
Identities = 57/184 (30%), Positives = 89/184 (48%), Gaps = 13/184 (7%)
Frame = +3
Query: 3 DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIP---TETKVVHLVNSIQNADIAEDVRQTAA 173
D A F LL+TL+S+ N R+ AE A++ + E + L +S+ + D+R AA
Sbjct: 17 DPAAFDALLSTLMSSSNADRAAAEAAFHRLRGSHPEPLALRLASSLSSPATPADLRAMAA 76
Query: 174 VLLRRLFS---------AXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVS 326
VLLR+L S A Q L++ LL LQ D + + +KVCD +S
Sbjct: 77 VLLRKLLSPTPSSDASSAAAAPVWPHLSPAGQAALKQHLLSALQSDPPKPIAKKVCDAIS 136
Query: 327 ELARNHIDDDGNNQWPEFLQFMFTCASAQD-PNIKEAGIRMFTSVPGVFGNRQTENLDVI 503
ELA + + N W E L F+F AS + PN++E+ + +F + ++L I
Sbjct: 137 ELAALLLPE---NAWAELLPFLFRAASGPEAPNLQESALLIFARLADYIAESLLDHLMTI 193
Query: 504 KXML 515
+L
Sbjct: 194 HNLL 197
>03_02_0441 -
8517501-8517701,8518004-8518139,8519995-8520107,
8520189-8520284,8520376-8520590,8520675-8520797,
8520887-8520917,8521020-8521079,8521951-8522106,
8522185-8522274,8522347-8522562,8522671-8522805,
8522898-8523401,8523485-8523700,8524411-8524456,
8524542-8524678,8525059-8525191,8526084-8526358
Length = 960
Score = 66.1 bits (154), Expect = 2e-11
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 1/165 (0%)
Frame = +3
Query: 24 LLNTLLSTDNDIRSQAEDAYNNIPTETKVVH-LVNSIQNADIAEDVRQTAAVLLRRLFSA 200
LL L DND R QAE+ + + +VV LV+ ++ A +VRQ AAVLLR+ ++
Sbjct: 8 LLIQFLMPDNDARRQAEEQIRRLARDPQVVPALVHHLRTAK-TPNVRQLAAVLLRKKITS 66
Query: 201 XXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEF 380
+ L++ L+ ++ +D S +RR +VVS +A+ + +WPE
Sbjct: 67 HWPKLPPHA----KASLKQALIDSITIDHSHLVRRASANVVSIIAKYAVPA---GEWPEL 119
Query: 381 LQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKXML 515
L F+F C+ + + +E + +F+S+ G +L+ ++ +L
Sbjct: 120 LPFIFQCSQSPQEDHREVALILFSSLTETIGTTFQSHLNDLQPIL 164
>10_08_0616 + 19286014-19286928
Length = 304
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 6 QAQFYQLLNTLLSTDNDIRSQAEDAYNNIP 95
Q++ Y+ + +S DND +DA NN+P
Sbjct: 124 QSKLYEEIKATMSGDNDDEINEDDARNNLP 153
>01_07_0224 - 42121011-42122486
Length = 491
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +3
Query: 327 ELARNHIDDDGNNQWPEFLQFMF 395
+L ++D G +WP F+QF F
Sbjct: 7 DLGGGGVEDGGGKKWPGFVQFFF 29
>01_07_0027 -
40578075-40578437,40578647-40578767,40578852-40578952,
40579176-40579451,40579485-40579805,40581609-40581623,
40581969-40582295,40583287-40583538
Length = 591
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +3
Query: 24 LLNTLLSTDNDIRSQAEDAYNN 89
LL TLLS D D+R A DA N+
Sbjct: 375 LLETLLSIDPDMRGTATDALNS 396
>11_01_0346 -
2589111-2589220,2589613-2589852,2589956-2590028,
2590301-2590606,2590698-2590912,2591461-2591755,
2591901-2592065,2592142-2592738,2593029-2593115,
2593203-2593523,2594047-2596071
Length = 1477
Score = 27.1 bits (57), Expect = 8.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +2
Query: 377 VPTVHVYLCQCARSKHQRSWY 439
V V ++ C+C S QR WY
Sbjct: 343 VLAVTIFFCKCCESLSQRQWY 363
>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
18303723-18303836,18303903-18304046,18316147-18316312,
18316396-18317130,18317219-18317422,18317496-18318177,
18318272-18318528,18318604-18319298,18319345-18319382,
18319847-18319928,18320018-18320112,18320443-18320526,
18320601-18320891,18321521-18321853,18321948-18322150,
18322243-18322399,18322482-18322585,18322675-18322835,
18323511-18323824,18324317-18324589,18324666-18324967,
18325459-18325549,18326140-18326190,18326700-18326768,
18326926-18327017,18327082-18327148,18328582-18328746,
18329027-18329103,18329572-18329766,18330208-18330275,
18331081-18331172,18331399-18331522,18331608-18331705,
18332384-18332997,18333620-18333626
Length = 2892
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = +3
Query: 72 EDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLLRRLF 194
ED+Y+N+P +V+ N + I ++V + +LRR F
Sbjct: 2820 EDSYHNLPPLLEVMQARNPGTHMAILDEVNEYGENVLRRAF 2860
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,065,322
Number of Sequences: 37544
Number of extensions: 248595
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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