Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32218
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta...    90   1e-18
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical ...    27   6.0  
AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormo...    27   6.0  
Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical pr...    27   8.0  
Z49071-4|CAA88877.1|  166|Caenorhabditis elegans Hypothetical pr...    27   8.0  
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>AC006624-8|AAF39782.2| 1092|Caenorhabditis elegans Importin beta
           family protein 3 protein.
          Length = 1092

 Score = 89.8 bits (213), Expect = 1e-18
 Identities = 51/171 (29%), Positives = 80/171 (46%)
 Frame = +3

Query: 3   DQAQFYQLLNTLLSTDNDIRSQAEDAYNNIPTETKVVHLVNSIQNADIAEDVRQTAAVLL 182
           D  QF +L+  L S DNDIR QAE+ Y  I   TKV  L  +  +     D R T  V L
Sbjct: 2   DVNQFTELITKLQSADNDIRKQAEEVYEKIEGPTKVAALFEAYTHHTNNSDARSTVLVFL 61

Query: 183 RRLFSAXXXXXXXXXXXXQQTVLREQLLLTLQMDLSQYLRRKVCDVVSELARNHIDDDGN 362
           RR+ +              +  +  ++L  +  +    +++K+ D++SE+A N IDD G+
Sbjct: 62  RRVLARDWDAIWETLNEENKQRILAKVLEMIVHETELSIKKKIADLISEIASNLIDDSGD 121

Query: 363 NQWPEFLQFMFTCASAQDPNIKEAGIRMFTSVPGVFGNRQTENLDVIKXML 515
             W   L+ M  C  ++D       + +    P +FGNR    L  +K +L
Sbjct: 122 MTWGGVLELMDHCLKSEDLTGNYIALLILRGCPIIFGNRLAHFLPTLKVVL 172


>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical protein
            D2045.2 protein.
          Length = 1792

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +3

Query: 264  LLTLQMDLSQYLRRKVCDVVSELARNHIDDDGNNQWPEFLQFMFTCASAQDPNIKEAGIR 443
            LL    D    +R   C  +S+L R H   + +   PE+L+ +         +++EA  R
Sbjct: 1123 LLPALTDREYRVRESACLALSDLLRGHDTVEMHKMIPEYLEAILRVRDDVKESVREAADR 1182

Query: 444  MFTSV 458
               S+
Sbjct: 1183 AADSI 1187


>AL032646-5|CAA21682.1| 1798|Caenorhabditis elegans Hypothetical
            protein Y54E2A.6 protein.
          Length = 1798

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 418  QTSKKLVLE-CLRLYQVYLEIVRLKTWM 498
            +T  K VL+ C+R+ Q   E+ RLK W+
Sbjct: 1546 RTDLKSVLDQCIRILQAMREMARLKNWL 1573


>AF022983-3|AAB69942.2|  399|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 270 protein.
          Length = 399

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
 Frame = +2

Query: 119 SEFNSKCRHCR--RCASNGCRA 178
           SEF S CRHCR  +C   G +A
Sbjct: 116 SEFRSTCRHCRFKKCFDVGMKA 137


>Z71179-1|CAA94888.1|  224|Caenorhabditis elegans Hypothetical
           protein F07D3.3 protein.
          Length = 224

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 48  DNDIRSQAEDAYNNIPTETKVVHLVNSIQNAD 143
           D D   QA    NNIP E  V+H+  S +  D
Sbjct: 149 DQDECMQAVQELNNIPVEDSVIHMTISTRFID 180


>Z49071-4|CAA88877.1|  166|Caenorhabditis elegans Hypothetical
           protein T22C8.5 protein.
          Length = 166

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 92  SNRNKSSAPSEFNSKCRHCRRCASNGCRAV 181
           S+ + S   +E  +K R C RC    C+A+
Sbjct: 37  SSSSSSIGANELTTKRRKCERCTCPNCKAI 66


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  ILSVAKYFTFNR**YQIPSRGRIQQHSNRNKSSAPSEFNS 133
           +L V+K +T  +  YQ   R  + +HSN NKS    E ++
Sbjct: 108 LLDVSKVWTDVKVNYQDYLRNTLDEHSNSNKSDVLKEIDT 147


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,561,005
Number of Sequences: 27780
Number of extensions: 229101
Number of successful extensions: 712
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)