Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32216
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    26   2.9  
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S...    26   2.9  
SPBC354.13 |rga6||GTPase activating protein Rga6|Schizosaccharom...    25   8.9  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    25   8.9  

>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 243 KPFFAFLALEASSMRLRTSARLRSISACL 157
           K FF  L  E+  +RL+T+  + S+  CL
Sbjct: 325 KAFFTLLESESMEIRLQTATTICSVIGCL 353


>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
           Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -3

Query: 472 FQIEFXIFKTSDAFMVVFANPLNSIFVGVVNVLRFTAPLLD 350
           + +++ + K +   M V  +PL S F+  +N LRF   + D
Sbjct: 781 YLLKYSLGKGAKTLMFVNVSPLKSQFMDTLNSLRFATKVND 821


>SPBC354.13 |rga6||GTPase activating protein
           Rga6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 733

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -3

Query: 424 VFANPLNSIFVGVVNVLRFTAPLLDDAPP 338
           VF  P+  +     N+ +FT P  + APP
Sbjct: 299 VFGKPIGDLTSDPTNLCKFTFPTPECAPP 327


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 365 GKPKNIDDANEDTIKRVCKDYHERIARLEDXKFDLEYIVKRKDMEIS 505
           G    ID++  +++KR    Y  ++  ++     LE  ++R + EIS
Sbjct: 837 GSDNRIDESELNSVKRSLLKYENKLQIIKSSSSGLEEQMQRINSEIS 883


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,152
Number of Sequences: 5004
Number of extensions: 19358
Number of successful extensions: 58
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)