Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32216
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0545 - 4756266-4757510                                           31   0.55 
02_01_0421 + 3080801-3081120,3081578-3081663,3081987-3082125,308...    29   2.9  
03_02_0080 + 5498638-5498699,5499121-5499190,5499551-5500711,550...    27   6.8  
12_01_0622 + 5124213-5125292,5126820-5128685                           27   8.9  
03_01_0555 + 4132630-4132923,4133514-4133771,4134125-4134249,413...    27   8.9  
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502...    27   8.9  

>05_01_0545 - 4756266-4757510
          Length = 414

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = -2

Query: 419 CKPS**YLRWRRQCS*VYRTSPR*CASFQ-QLYVPAP 312
           C P+  Y R  RQC+  Y   P  CA+FQ + +VP+P
Sbjct: 346 CLPNRPYQRTPRQCAAFYAAPPVDCAAFQCKPFVPSP 382


>02_01_0421 +
           3080801-3081120,3081578-3081663,3081987-3082125,
           3082470-3082554
          Length = 209

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 125 HH--PPLLLCWFRVSARIRRWPYEMV*PTRATVADW 24
           HH  PP  L   RV+A +RRW   +  PTRA+   W
Sbjct: 70  HHGCPPPAL---RVAAAVRRWTSTLTWPTRASPPRW 102


>03_02_0080 +
           5498638-5498699,5499121-5499190,5499551-5500711,
           5500940-5501029,5501147-5501464
          Length = 566

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = +3

Query: 321 NVKLLKGGASSRRGAVNLRTLTTPT 395
           N K  KGGAS+ + A + RT T PT
Sbjct: 504 NGKAKKGGASTPKKAAHRRTTTVPT 528


>12_01_0622 + 5124213-5125292,5126820-5128685
          Length = 981

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +2

Query: 434 RIARLEDXKFDLEYIVKRKDMEISPPE 514
           R+ RLE     L+++V  KD++ +PP+
Sbjct: 778 RLQRLEVRSESLDFLVNNKDIDATPPK 804


>03_01_0555 +
           4132630-4132923,4133514-4133771,4134125-4134249,
           4134789-4134990,4135172-4135297,4135404-4135660,
           4135968-4136075,4136142-4136310,4136378-4136543,
           4136967-4136998,4137256-4137579,4137683-4137757,
           4138093-4138162,4138228-4138385,4138872-4139021
          Length = 837

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 398 DTIKRVCKDYHERIARLEDXKFDLEYIV 481
           +T  ++C+ Y E  A  +  KFDL YIV
Sbjct: 643 ETGPKICQKYIECPALFQGRKFDLRYIV 670


>02_04_0244 -
           21248449-21249038,21249240-21249438,21249963-21250212,
           21250552-21250577
          Length = 354

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 3   RLAARLAPVSNCGSCW 50
           R+  RL+P SNC  CW
Sbjct: 214 RVGVRLSPYSNCLDCW 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,916,103
Number of Sequences: 37544
Number of extensions: 158023
Number of successful extensions: 472
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)