Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32216
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit...    29   1.4  
At5g57970.1 68418.m07253 methyladenine glycosylase family protei...    28   3.2  
At2g18900.1 68415.m02205 transducin family protein / WD-40 repea...    27   5.7  
At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ...    27   5.7  

>At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor
           family protein low similarity to SP|P83326
           Pectinesterase inhibitor (Pectin methylesterase
           inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific
           gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam
           profile PF04043: Plant invertase/pectin methylesterase
           inhibitor
          Length = 145

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 368 KPKNIDDANEDTIKRVCKDYHERIARLED 454
           K KN++ A EDT+    K+Y + +A+L+D
Sbjct: 53  KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81


>At5g57970.1 68418.m07253 methyladenine glycosylase family protein
           similar to SP|P05100 DNA-3-methyladenine glycosylase I
           (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I,
           constitutive) {Escherichia coli}; contains Pfam profile
           PF03352: Methyladenine glycosylase
          Length = 347

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +3

Query: 321 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMXNSIWNTSL 482
           +++ L+  +S R G+    +  TPT+ +     K T+NA+ +L+      N++L
Sbjct: 40  SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93


>At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat
           family protein contains 5 WD-40 repeats (PF00400);
           related to LACK protective antigen (GI:13625467)
           [Leishmania donovani]
          Length = 804

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 378 TLTTPTKILLRGFAKTTMNASLVLKMXNSIWNTSLKGKIW 497
           TLT  TK+   G ++  + AS + +   S+WNTS     W
Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616


>At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein
           contains tubulin-tyrosine ligase family domain,
           Pfam:PF03133
          Length = 867

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 398 DTIKRVCKDYHERIARLEDXKFDLEYIV 481
           +T  ++C+ Y E  A  +  KFDL Y+V
Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,086,736
Number of Sequences: 28952
Number of extensions: 113186
Number of successful extensions: 312
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)