BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32216 (516 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibit... 29 1.4 At5g57970.1 68418.m07253 methyladenine glycosylase family protei... 28 3.2 At2g18900.1 68415.m02205 transducin family protein / WD-40 repea... 27 5.7 At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein ... 27 5.7 >At4g02250.1 68417.m00304 invertase/pectin methylesterase inhibitor family protein low similarity to SP|P83326 Pectinesterase inhibitor (Pectin methylesterase inhibitor) (PMEI) {Actinidia chinensis}, pistil-specific gene sts15 [Solanum tuberosum] GI:1616628; contains Pfam profile PF04043: Plant invertase/pectin methylesterase inhibitor Length = 145 Score = 29.5 bits (63), Expect = 1.4 Identities = 12/29 (41%), Positives = 20/29 (68%) Frame = +2 Query: 368 KPKNIDDANEDTIKRVCKDYHERIARLED 454 K KN++ A EDT+ K+Y + +A+L+D Sbjct: 53 KQKNLEPALEDTLDDCSKNYLDAVAQLDD 81 >At5g57970.1 68418.m07253 methyladenine glycosylase family protein similar to SP|P05100 DNA-3-methyladenine glycosylase I (EC 3.2.2.20) (3-methyladenine-DNA glycosylase I, constitutive) {Escherichia coli}; contains Pfam profile PF03352: Methyladenine glycosylase Length = 347 Score = 28.3 bits (60), Expect = 3.2 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = +3 Query: 321 NVKLLKGGASSRRGAVNLRTLTTPTKILLRGFAKTTMNASLVLKMXNSIWNTSL 482 +++ L+ +S R G+ + TPT+ + K T+NA+ +L+ N++L Sbjct: 40 SLRKLERSSSGRTGSDEKTSYATPTETVSSSSQKHTLNAASILRRHEQNLNSNL 93 >At2g18900.1 68415.m02205 transducin family protein / WD-40 repeat family protein contains 5 WD-40 repeats (PF00400); related to LACK protective antigen (GI:13625467) [Leishmania donovani] Length = 804 Score = 27.5 bits (58), Expect = 5.7 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = +3 Query: 378 TLTTPTKILLRGFAKTTMNASLVLKMXNSIWNTSLKGKIW 497 TLT TK+ G ++ + AS + + S+WNTS W Sbjct: 577 TLTPITKLCFAGKSEFLVAASHIPRPELSVWNTSKLSLSW 616 >At1g77550.1 68414.m09030 tubulin-tyrosine ligase family protein contains tubulin-tyrosine ligase family domain, Pfam:PF03133 Length = 867 Score = 27.5 bits (58), Expect = 5.7 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +2 Query: 398 DTIKRVCKDYHERIARLEDXKFDLEYIV 481 +T ++C+ Y E A + KFDL Y+V Sbjct: 674 ETGPKICQKYIEHPALFKGNKFDLRYVV 701 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 8,086,736 Number of Sequences: 28952 Number of extensions: 113186 Number of successful extensions: 312 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 309 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 312 length of database: 12,070,560 effective HSP length: 76 effective length of database: 9,870,208 effective search space used: 937669760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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