BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= epV32215 (516 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 168 4e-43 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 168 4e-43 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 119 3e-28 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 92 5e-20 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 44 2e-05 SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar... 25 5.1 SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom... 25 6.7 SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 6.7 SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.7 SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 25 8.9 SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 25 8.9 SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 8.9 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 168 bits (409), Expect = 4e-43 Identities = 76/121 (62%), Positives = 90/121 (74%) Frame = +2 Query: 2 LYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 181 +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYL Sbjct: 713 VYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYL 772 Query: 182 PVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGL 361 PVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE + Sbjct: 773 PVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENV 832 Query: 362 P 364 P Sbjct: 833 P 833 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 168 bits (409), Expect = 4e-43 Identities = 76/121 (62%), Positives = 90/121 (74%) Frame = +2 Query: 2 LYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 181 +YA L A P + EPV+L EIQ E A+GGIY VLN++RGHVF E Q GTP++ +KAYL Sbjct: 713 VYASTLLASPIIQEPVFLVEIQVSENAMGGIYSVLNKKRGHVFSEEQRVGTPLYNIKAYL 772 Query: 182 PVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGL 361 PVNESFGFT +LR T GQAFPQ VFDHW + GDP +P SKP +V E RKRKGLKE + Sbjct: 773 PVNESFGFTGELRQATAGQAFPQLVFDHWSPMSGDPLDPTSKPGQIVCEARKRKGLKENV 832 Query: 362 P 364 P Sbjct: 833 P 833 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 119 bits (286), Expect = 3e-28 Identities = 53/102 (51%), Positives = 71/102 (69%) Frame = +2 Query: 5 YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184 Y+ LTA PRLMEPVY+ E+ P ++ IY +L RRRGHV ++ G+P+++V+A +P Sbjct: 830 YSSFLTASPRLMEPVYMVEVHAPADSLPIIYDLLTRRRGHVLQDIPRPGSPLYLVRALIP 889 Query: 185 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKP 310 V +S GF DLR +T GQA Q VFDHWQV+PGDP + KP Sbjct: 890 VIDSCGFETDLRVHTQGQAMCQMVFDHWQVVPGDPLDKSIKP 931 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 91.9 bits (218), Expect = 5e-20 Identities = 39/87 (44%), Positives = 57/87 (65%) Frame = +2 Query: 29 PRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFT 208 PRLM +Y C++Q +G +YGV+++RRG V +E GTP FIVKA +PV ESFGF Sbjct: 860 PRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFA 919 Query: 209 ADLRSNTGGQAFPQCVFDHWQVLPGDP 289 ++ T G A+PQ +F +++L +P Sbjct: 920 VEILKRTSGAAYPQLIFHGFEMLDENP 946 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 43.6 bits (98), Expect = 2e-05 Identities = 21/74 (28%), Positives = 40/74 (54%) Frame = +2 Query: 17 LTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNES 196 L A P ++EP+ I P GG+ G L++R+ + + F ++A +P+N Sbjct: 668 LQANPMVLEPIMNVSITAPVEHQGGVIGNLDKRKATIVDSD--TDEDEFTLQAEVPLNSM 725 Query: 197 FGFTADLRSNTGGQ 238 F +++D+R+ T G+ Sbjct: 726 FSYSSDIRALTKGK 739 >SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosaccharomyces pombe|chr 3|||Manual Length = 232 Score = 25.4 bits (53), Expect = 5.1 Identities = 12/27 (44%), Positives = 14/27 (51%) Frame = +2 Query: 263 HWQVLPGDPCEPQSKPYNVVQETRKRK 343 H+Q L GDP + PY VQ RK Sbjct: 78 HFQNLSGDPVSQMATPYPPVQIELMRK 104 >SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 350 Score = 25.0 bits (52), Expect = 6.7 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 3/41 (7%) Frame = -1 Query: 507 SHLRVCFNMMRNM---CC*K*TCVKRFPYRYVFLICFNYVV 394 SH +C N + + C TC+ R YRY F+ + V+ Sbjct: 196 SHCHLCDNCVEYLDHHCIWLNTCIGRRNYRYYFIFLLSVVL 236 >SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharomyces pombe|chr 1|||Manual Length = 429 Score = 25.0 bits (52), Expect = 6.7 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +3 Query: 204 LLPICVPTPADRPSRSAYSTIGRS 275 +LP+ + TPA P + YS G S Sbjct: 109 VLPLSINTPAQWPEKEVYSLQGTS 132 >SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 489 Score = 25.0 bits (52), Expect = 6.7 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 5/55 (9%) Frame = +1 Query: 208 CRFAFQHRRTGL----PAVR-IRPLAGPPWRPVRTSEQALQRCTGNEKEERIEGR 357 CRF + H + L PA R + WRPV E + NE+++R + R Sbjct: 42 CRFCWHHIKEDLNGRCPACRRLYTEENVQWRPVTAEEWKMDLHRKNERKKREKER 96 >SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 507 Score = 24.6 bits (51), Expect = 8.9 Identities = 11/27 (40%), Positives = 17/27 (62%) Frame = +1 Query: 265 LAGPPWRPVRTSEQALQRCTGNEKEER 345 ++G +RPV E+ LQ+ N +EER Sbjct: 435 VSGKVFRPVEEMEKELQKIRENFEEER 461 >SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit Sec63 |Schizosaccharomyces pombe|chr 2|||Manual Length = 611 Score = 24.6 bits (51), Expect = 8.9 Identities = 11/38 (28%), Positives = 20/38 (52%) Frame = +2 Query: 92 IYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGF 205 ++ LNR++ + F Q+ ++ A L V +FGF Sbjct: 275 LFDHLNRKKTNNFNTHQILSQSDVVLNALLSVATAFGF 312 >SPCC777.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 128 Score = 24.6 bits (51), Expect = 8.9 Identities = 9/20 (45%), Positives = 12/20 (60%) Frame = +2 Query: 287 PCEPQSKPYNVVQETRKRKG 346 P P +P+NV Q +KR G Sbjct: 88 PSLPDQEPWNVFQNAKKRDG 107 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,124,023 Number of Sequences: 5004 Number of extensions: 44334 Number of successful extensions: 93 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 92 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 208287218 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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