Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32215
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   208   2e-54
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             117   7e-27
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 112   1e-25
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 84   6e-17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.020
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.11 
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   4.0  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   5.3  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  208 bits (509), Expect = 2e-54
 Identities = 98/121 (80%), Positives = 103/121 (85%)
 Frame = +2

Query: 2    LYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 181
            LYAC+LTA+P L+EPVY  EIQCPE AVGGIYGVLNRRRG V EES VAGTPMFIVKAYL
Sbjct: 704  LYACMLTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAYL 763

Query: 182  PVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGL 361
            PV ESFGFTADLRS TGGQAFPQCVFDHWQVLPGD  +  S P  VV  TRKRKGLKEG+
Sbjct: 764  PVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMPGQVVANTRKRKGLKEGI 823

Query: 362  P 364
            P
Sbjct: 824  P 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  117 bits (281), Expect = 7e-27
 Identities = 49/97 (50%), Positives = 68/97 (70%)
 Frame = +2

Query: 5   YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
           Y+  L A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P
Sbjct: 685 YSAFLMATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIP 744

Query: 185 VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 295
             +SFGF  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 745 AIDSFGFETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 781


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  112 bits (270), Expect = 1e-25
 Identities = 47/91 (51%), Positives = 65/91 (71%)
 Frame = +2

Query: 23  AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 202
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60

Query: 203 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 295
           F  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 61  FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = +2

Query: 26  QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 202
           QP RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466

Query: 203 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 289
           F+ ++R  T G A PQ +F HW+ +  DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +3

Query: 183 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 362
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP       +RG    K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = +2

Query: 86  GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 238
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = +3

Query: 219 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 365
           +PT  ++ SRS+    G S   TR   R +     R R+RGK+   +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = -1

Query: 267 QWSNTHCGKACPPVLE--RKSAVKPNDSL 187
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = +3

Query: 129  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 281
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +2

Query: 272 VLPGDPCEPQS-KPYNVVQETRK 337
           +LP  PCEP S KPY    E R+
Sbjct: 65  ILPASPCEPDSPKPYTPESEGRE 87


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,596,168
Number of Sequences: 59808
Number of extensions: 360497
Number of successful extensions: 943
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)