Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32215
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical pr...   228   2e-60
M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation fact...   228   2e-60
U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation fact...   113   7e-26
M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.       113   7e-26
Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical pr...    67   8e-12
Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical pr...    47   9e-06
Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical pr...    35   0.030
AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical ...    29   2.6  

>Z81068-5|CAB02985.1|  852|Caenorhabditis elegans Hypothetical protein
            F25H5.4 protein.
          Length = 852

 Score =  228 bits (557), Expect = 2e-60
 Identities = 102/120 (85%), Positives = 110/120 (91%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLP
Sbjct: 724  YASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLP 783

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 364
            VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 784  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>M86959-1|AAD03339.1|  852|Caenorhabditis elegans elongation factor
            protein.
          Length = 852

 Score =  228 bits (557), Expect = 2e-60
 Identities = 102/120 (85%), Positives = 110/120 (91%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            YA +LTA+PRL+EPVYL EIQCPE AVGGIYGVLNRRRGHVFEESQV GTPMF+VKAYLP
Sbjct: 724  YASVLTAEPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLP 783

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 364
            VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP E  +KP  +V +TRKRKGLKEG+P
Sbjct: 784  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843


>U50193-2|AAA91248.1|  974|Caenorhabditis elegans Elongation factor
            protein 1 protein.
          Length = 974

 Score =  113 bits (272), Expect = 7e-26
 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            Y+  L A PRLMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+P
Sbjct: 821  YSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIP 880

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQE 328
            V +SFGF  DLR +T GQAF    F HWQ++PGDP +          Q  P+     + +
Sbjct: 881  VMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIK 940

Query: 329  TRKRKGLKE 355
            TR+RKGL E
Sbjct: 941  TRRRKGLSE 949


>M86958-1|AAA21824.1|  849|Caenorhabditis elegans eft-1 protein.
          Length = 849

 Score =  113 bits (272), Expect = 7e-26
 Identities = 57/129 (44%), Positives = 77/129 (59%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            Y+  L A PRLMEP Y  E+  P   V  +Y VL +RRGHV  ++ + G+PM+ + AY+P
Sbjct: 696  YSAFLMATPRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIP 755

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP---------QSKPY---NVVQE 328
            V +SFGF  DLR +T GQAF    F HWQ++PGDP +          Q  P+     + +
Sbjct: 756  VMDSFGFETDLRIHTQGQAFCMSAFHHWQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIK 815

Query: 329  TRKRKGLKE 355
            TR+RKGL E
Sbjct: 816  TRRRKGLSE 824


>Z83235-8|CAB05774.2|  894|Caenorhabditis elegans Hypothetical protein
            K10C3.5a protein.
          Length = 894

 Score = 66.9 bits (156), Expect = 8e-12
 Identities = 33/86 (38%), Positives = 46/86 (53%)
 Frame = +2

Query: 32   RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 211
            RL+  +Y C +     A+G ++ VL++R+  V  E     T +F V + +PV ESF F  
Sbjct: 753  RLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCD 812

Query: 212  DLRSNTGGQAFPQCVFDHWQVLPGDP 289
             LR  T G A  Q  F HWQV+  DP
Sbjct: 813  QLRKFTSGMASAQLQFSHWQVIDEDP 838


>Z83235-9|CAI79209.1|  705|Caenorhabditis elegans Hypothetical
           protein K10C3.5b protein.
          Length = 705

 Score = 46.8 bits (106), Expect = 9e-06
 Identities = 24/55 (43%), Positives = 28/55 (50%)
 Frame = +2

Query: 125 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 289
           V  E     T +F V + +PV ESF F   LR  T G A  Q  F HWQV+  DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649


>Z81519-1|CAB04216.1|  750|Caenorhabditis elegans Hypothetical
           protein F29C12.4 protein.
          Length = 750

 Score = 35.1 bits (77), Expect = 0.030
 Identities = 20/68 (29%), Positives = 33/68 (48%)
 Frame = +2

Query: 35  LMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTAD 214
           L+EP+   E   P    G +   L +R   +       G    I +A  P+++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699

Query: 215 LRSNTGGQ 238
           LRS T G+
Sbjct: 700 LRSLTEGK 707


>AF068713-7|AAC17798.2|  359|Caenorhabditis elegans Hypothetical
           protein T24A6.11 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 14/40 (35%), Positives = 24/40 (60%)
 Frame = -1

Query: 513 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 394
           +L+ LR+C+       C + TC K FP ++V L+  ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328


>AF016661-4|AAB66050.2|  567|Caenorhabditis elegans Hypothetical
           protein F02E11.1 protein.
          Length = 567

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 280 REDLPMVEYALREGLSAGVGTQIGSKTERLID 185
           +ED+  +EY + E  ++ +GTQ+  KT   +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,086,387
Number of Sequences: 27780
Number of extensions: 265990
Number of successful extensions: 654
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)