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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32215
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...   169   1e-42
At1g06220.2 68414.m00656 elongation factor Tu family protein sim...   122   1e-28
At1g06220.1 68414.m00655 elongation factor Tu family protein sim...   122   1e-28
At5g25230.1 68418.m02991 elongation factor Tu family protein tra...   120   8e-28
At3g22980.1 68416.m02898 elongation factor Tu family protein sim...    89   2e-18
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati...    52   3e-07
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati...    52   3e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim...    48   3e-06
At5g13650.2 68418.m01585 elongation factor family protein contai...    42   3e-04
At5g13650.1 68418.m01584 elongation factor family protein contai...    42   3e-04
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-...    31   0.61 
At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634...    29   1.9  
At2g35490.1 68415.m04347 plastid-lipid associated protein PAP, p...    28   4.3  
At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /...    27   5.7  
At3g63180.1 68416.m07097 expressed protein                             27   5.7  
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    27   7.5  

>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
            putative similar to ELONGATION FACTOR 2 GB:O14460 from
            [Schizosaccharomyces pombe]
          Length = 843

 Score =  169 bits (410), Expect = 1e-42
 Identities = 74/120 (61%), Positives = 96/120 (80%)
 Frame = +2

Query: 2    LYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYL 181
            +YA  +TA+PRL+EPVY+ EIQ PE A+GGIY VLN++RGHVFEE Q  GTP++ +KAYL
Sbjct: 714  IYASQITAKPRLLEPVYMVEIQAPEGALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYL 773

Query: 182  PVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEPQSKPYNVVQETRKRKGLKEGL 361
            PV ESFGF++ LR+ T GQAFPQCVFDHW+++  DP EP ++   +V + RKRKGLKE +
Sbjct: 774  PVVESFGFSSQLRAATSGQAFPQCVFDHWEMMSSDPLEPGTQASVLVADIRKRKGLKEAM 833


>At1g06220.2 68414.m00656 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  122 bits (294), Expect = 1e-28
 Identities = 66/129 (51%), Positives = 80/129 (62%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRGHV  +    GTP +IVKA+LP
Sbjct: 831  YSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLP 890

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP--QSKPY----------NVVQE 328
            V ESFGF  DLR +T GQAF   VFDHW ++PGDP +   Q +P             + +
Sbjct: 891  VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEPAPIQHLAREFMVK 950

Query: 329  TRKRKGLKE 355
            TR+RKG+ E
Sbjct: 951  TRRRKGMSE 959


>At1g06220.1 68414.m00655 elongation factor Tu family protein similar
            to Cryptosporidium parvum elongation factor-2 GB:U21667
            GI:706974 from [Cryptosporidium parvum]
          Length = 987

 Score =  122 bits (294), Expect = 1e-28
 Identities = 66/129 (51%), Positives = 80/129 (62%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRGHV  +    GTP +IVKA+LP
Sbjct: 831  YSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLP 890

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP--QSKPY----------NVVQE 328
            V ESFGF  DLR +T GQAF   VFDHW ++PGDP +   Q +P             + +
Sbjct: 891  VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEPAPIQHLAREFMVK 950

Query: 329  TRKRKGLKE 355
            TR+RKG+ E
Sbjct: 951  TRRRKGMSE 959


>At5g25230.1 68418.m02991 elongation factor Tu family protein
            translation Elongation Factor 2, Schizosaccharomyces
            pombe, PIR:T39902
          Length = 973

 Score =  120 bits (288), Expect = 8e-28
 Identities = 65/129 (50%), Positives = 80/129 (62%), Gaps = 12/129 (9%)
 Frame = +2

Query: 5    YACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLP 184
            Y+  L A PRLMEPVY  EIQ P   V  IY VL+RRRG+V  +    GTP +IVKA+LP
Sbjct: 817  YSAFLMATPRLMEPVYYVEIQTPIDCVTAIYTVLSRRRGYVTSDVPQPGTPAYIVKAFLP 876

Query: 185  VNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDPCEP--QSKPY----------NVVQE 328
            V ESFGF  DLR +T GQAF   VFDHW ++PGDP +   Q +P             + +
Sbjct: 877  VIESFGFETDLRYHTQGQAFCLSVFDHWAIVPGDPLDKAIQLRPLEPAPIQHLAREFMVK 936

Query: 329  TRKRKGLKE 355
            TR+RKG+ E
Sbjct: 937  TRRRKGMSE 945


>At3g22980.1 68416.m02898 elongation factor Tu family protein similar
            to eukaryotic translation elongation factor 2
            GB:NP_001952 [Homo sapiens]
          Length = 1015

 Score = 88.6 bits (210), Expect = 2e-18
 Identities = 39/94 (41%), Positives = 56/94 (59%)
 Frame = +2

Query: 8    ACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPV 187
            A +L   PR++E +Y CE+      +G +Y VL+RRR  + +E    G+ +F V AY+PV
Sbjct: 865  AAVLQTNPRIVEAMYFCELNTAPEYLGPMYAVLSRRRARILKEEMQEGSSLFTVHAYVPV 924

Query: 188  NESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 289
            +ESFGF  +LR  T G A    V  HW++L  DP
Sbjct: 925  SESFGFADELRKGTSGGASALMVLSHWEMLEEDP 958


>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
           similar to SP|P25039 Elongation factor G 1,
           mitochondrial precursor (mEF-G-1) {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03764: Elongation factor
           G domain IV, PF00679: Elongation factor G C-terminus
          Length = 754

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 25/76 (32%), Positives = 42/76 (55%)
 Frame = +2

Query: 11  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 190
           C   A+P ++EPV L E++ P    G + G +N+R+G +    Q       ++ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706

Query: 191 ESFGFTADLRSNTGGQ 238
             FG++  LRS T G+
Sbjct: 707 NMFGYSTSLRSMTQGK 722


>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
           similar to mitochondrial elongation factor GI:3917 from
           [Saccharomyces cerevisiae]
          Length = 754

 Score = 51.6 bits (118), Expect = 3e-07
 Identities = 25/76 (32%), Positives = 42/76 (55%)
 Frame = +2

Query: 11  CLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVN 190
           C   A+P ++EPV L E++ P    G + G +N+R+G +    Q       ++ A +P+N
Sbjct: 649 CYTAARPVILEPVMLVELKVPTEFQGTVAGDINKRKGIIVGNDQEGDDS--VITANVPLN 706

Query: 191 ESFGFTADLRSNTGGQ 238
             FG++  LRS T G+
Sbjct: 707 NMFGYSTSLRSMTQGK 722


>At1g62750.1 68414.m07082 elongation factor Tu family protein
           similar to elongation factor G SP:P34811 [Glycine max
           (Soybean)]
          Length = 783

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 27/86 (31%), Positives = 44/86 (51%)
 Frame = +2

Query: 23  AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 202
           A PR++EP+   E+  PE  +G + G LN RRG +       G  + +V + +P+ E F 
Sbjct: 683 AGPRMLEPIMRVEVVTPEEHLGDVIGDLNSRRGQINSFGDKPG-GLKVVDSLVPLAEMFQ 741

Query: 203 FTADLRSNTGGQAFPQCVFDHWQVLP 280
           + + LR  T G+A        + V+P
Sbjct: 742 YVSTLRGMTKGRASYTMQLAKFDVVP 767


>At5g13650.2 68418.m01585 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 676

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +2

Query: 32  RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 211
           +L+EP  +  ++ PE  +G +  +L +RRG +F+   V       ++  +P     G   
Sbjct: 473 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 532

Query: 212 DLRSNTGGQAFPQCVFDHWQVLPGD 286
            + + + G A    VFD +    GD
Sbjct: 533 AILTASRGTAILNTVFDSYGPWAGD 557


>At5g13650.1 68418.m01584 elongation factor family protein contains
           Pfam profiles: PF00009 elongation factor Tu GTP binding
           domain,PF00679 elongation factor G C-terminus,  PF03144
           elongation factor Tu domain 2
          Length = 675

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 21/85 (24%), Positives = 39/85 (45%)
 Frame = +2

Query: 32  RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTA 211
           +L+EP  +  ++ PE  +G +  +L +RRG +F+   V       ++  +P     G   
Sbjct: 472 KLLEPYEIATVEVPEAHMGPVVELLGKRRGQMFDMQGVGSEGTTFLRYKIPTRGLLGLRN 531

Query: 212 DLRSNTGGQAFPQCVFDHWQVLPGD 286
            + + + G A    VFD +    GD
Sbjct: 532 AILTASRGTAILNTVFDSYGPWAGD 556


>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
           GTP-binding protein GUF1 - Saccharomyces cerevisiae,
           PIR:S50374
          Length = 661

 Score = 30.7 bits (66), Expect = 0.61
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +2

Query: 41  EPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNE-SFGFTADL 217
           EP  +  I  P   VG +  + + RRG   E + +    +F+ K  LP+ E    F  +L
Sbjct: 466 EPTVIATIILPSEYVGAVINLCSDRRGQQLEYTFIDAQRVFL-KYQLPLREIVVDFYDEL 524

Query: 218 RSNTGGQA 241
           +S T G A
Sbjct: 525 KSITSGYA 532


>At5g61930.1 68418.m07774 expressed protein contains Pfam PF05634:
           Arabidopsis thaliana protein of unknown function
           (DUF794)
          Length = 340

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -2

Query: 326 PVQRCRACSEVRTGLQG 276
           PV RCR C+EV  G QG
Sbjct: 62  PVHRCRLCAEVHIGKQG 78


>At2g35490.1 68415.m04347 plastid-lipid associated protein PAP,
           putative similar to plastid-lipid associated protein
           PAP3 [Brassica rapa] GI:14248552; contains Pfam profile
           PF04755: PAP_fibrillin
          Length = 376

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 254 VFDHWQVLPGDPCEPQSKPYNV 319
           V D W   PGD  EP S+P NV
Sbjct: 71  VTDEWGEKPGDANEPDSQPDNV 92


>At4g23820.1 68417.m03425 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein weak
           similarity to polygalacturonase PG1 [Glycine max]
           GI:5669846; contains PF00295: Glycosyl hydrolases family
           28
          Length = 444

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +1

Query: 115 SWSRFRRVPGGRY-TYVHCEGL 177
           S+ R R +PGGRY +++H +GL
Sbjct: 123 SYGRGRELPGGRYMSFIHGDGL 144


>At3g63180.1 68416.m07097 expressed protein
          Length = 978

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 10/35 (28%), Positives = 21/35 (60%)
 Frame = +3

Query: 174 PTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSS 278
           P ++  +   L P+ VP+ + RP++S +  +G +S
Sbjct: 539 PAFIYPANHHLQPVMVPSKSSRPTKSPHLAVGLAS 573


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +3

Query: 177 TYLSMSRSVLLPICVPTPADRP---SRSAYSTIGRSSLETRANLRA 305
           +Y S SRSV  P    +P  RP   SRS YS++ RS   +++  R+
Sbjct: 212 SYSSKSRSVS-PARSISPRSRPLSRSRSLYSSVSRSQSRSKSRSRS 256


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,254,161
Number of Sequences: 28952
Number of extensions: 239006
Number of successful extensions: 618
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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