Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32211
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   2.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   8.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   8.0  
AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    21   8.0  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   8.0  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = +3

Query: 306 RSDCTTRKATVTFPRRACARSSGNWT 383
           +S CT       F ++ C    G+WT
Sbjct: 148 QSSCTIDVTYFPFDQQTCIMKFGSWT 173


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 259 ELSGQSYELGEFQTTRFVGVDLL 191
           +L+G ++ELG      +V +D+L
Sbjct: 98  QLTGGTWELGPMLCDSWVSLDIL 120


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 7/26 (26%), Positives = 11/26 (42%)
 Frame = +3

Query: 306 RSDCTTRKATVTFPRRACARSSGNWT 383
           +S C        F  ++C    G+WT
Sbjct: 155 KSSCEINVEYFPFDEQSCIMKFGSWT 180


>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = +3

Query: 270 RTLRPCXKNSGKRSDCTTRKATV 338
           R LR    N    S+CTTRK  +
Sbjct: 56  RALRLDTGNFSWGSECTTRKTRI 78


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 5/15 (33%), Positives = 10/15 (66%)
 Frame = -3

Query: 55  FWGQLIGPVFGVPEP 11
           FW + +  + G+P+P
Sbjct: 576 FWNEFLPKLKGIPDP 590


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,728
Number of Sequences: 438
Number of extensions: 1991
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)