Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32203
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    26   3.8  
SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyce...    25   5.1  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   6.7  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    25   6.7  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   8.9  

>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +1

Query: 31  KMVDLSAKSNMISATIKSRLTIAIHQYNTILWR 129
           K+  LS  SN ISA I  RL+ +   + T++WR
Sbjct: 8   KLRILSVGSNAISAFISWRLSESKACHTTLIWR 40


>SPAC12D12.09 |rev7||DNA polymerase zeta Rev7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 213

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +1

Query: 22  IFGKMVDLSAKSNMISATIKSR-LTIAIHQYNTILWRTLLPIL 147
           IFG+ + +S    + +  +  + L I   +YNTI+W++  PIL
Sbjct: 15  IFGEFLLVSIHCILYARRLYPQDLFIKARKYNTIVWQSRHPIL 57


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 153 SSENGQQCSPKNRVVLVYCDRQPTFYGGRD 64
           SS   + C PKN    V+   +P ++G  D
Sbjct: 205 SSSMNEFCYPKNGQTDVFAFNEPAYFGSSD 234


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 153 SSENGQQCSPKNRVVLVYCDRQPTFYGGRD 64
           SS   + C PKN    V+   +P ++G  D
Sbjct: 205 SSSMNEFCYPKNGQTDVFAFNEPAYFGSSD 234


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 79  LWWQRSYWIWLIGPPSC 29
           +W    YW + +G PSC
Sbjct: 312 VWQWEGYWSFCVGRPSC 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,999,217
Number of Sequences: 5004
Number of extensions: 39782
Number of successful extensions: 104
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)