Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32203
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0021 + 311914-312399,314218-314310,314391-314672,314754-31... 29 1.7
03_05_0386 - 23702447-23702758 29 1.7
12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749 29 2.2
07_01_0914 - 7693305-7693513,7693613-7694111,7694716-7696316,769... 29 2.9
01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679 28 3.9
12_02_0937 - 24568475-24569145,24569215-24569319,24569419-245699... 28 5.1
03_06_0732 - 35788417-35788485,35788776-35788871,35788963-357891... 28 5.1
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 28 5.1
02_01_0353 + 2545982-2549833 28 5.1
12_01_0660 + 5585172-5585356,5585717-5585761,5586942-5587026,558... 27 6.8
>04_01_0021 +
311914-312399,314218-314310,314391-314672,314754-314826,
315273-315405,315476-315629,315763-315843,316174-316296,
316629-316787,316862-316996,317159-317254,317416-317910,
318651-318722,319496-319537
Length = 807
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +3
Query: 75 HKKSVDDRNTPIQHDSLENTAAHSRKNSLVAL*MHNTQNIRTEMST 212
+KKSV D TP+ H S + H +KNS+ + T+N R T
Sbjct: 253 NKKSVRDAVTPLAHMSYNDQLEH-KKNSVAQILKRLTRNARKACPT 297
>03_05_0386 - 23702447-23702758
Length = 103
Score = 29.5 bits (63), Expect = 1.7
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 192 CFGCCAFIRPLRNSSENGQQCSPKNRVVLVYCDRQPTFYGGR 67
C G RPL + E G+Q SP ++ V D+Q +GGR
Sbjct: 30 CPGGVVAARPLHDDEEAGRQASPSTLLIAVGHDQQQ--HGGR 69
>12_01_0737 - 6588612-6588922,6595261-6596602,6596639-6596749
Length = 587
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +3
Query: 174 MHNTQNIRTEMSTFKSPILLSQTN--IVFSH*NCIISKLTYYTGECFKG*TCDIFNINHL 347
+ N Q++ + S LL + +VF C++SK + G+ + F +N +
Sbjct: 72 LKNVQHVPSIKKNLVSGSLLCREGFRLVFESNKCVVSKYETFVGKGYDSGGLFRFALNDM 131
Query: 348 CNNY 359
CNN+
Sbjct: 132 CNNH 135
>07_01_0914 -
7693305-7693513,7693613-7694111,7694716-7696316,
7696509-7696530
Length = 776
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/68 (23%), Positives = 28/68 (41%)
Frame = +2
Query: 104 TNTTRFFGEHCCPFSEEFLSGLMNAQHPKHKNRNVHIQIPYIIITNKHCLLALKLYNLKT 283
T FFG+H PF G + + P ++ N ++I T C L + +
Sbjct: 302 TWVNHFFGDHPVPFQSFLPDGFADPKEPLYEGPNFRVEIRNGRPTGIMCGLEMTYVHTYP 361
Query: 284 YLLHRRVF 307
+++R F
Sbjct: 362 LVVYRAAF 369
>01_06_1116 + 34629592-34630578,34631058-34631686,34632589-34632679
Length = 568
Score = 28.3 bits (60), Expect = 3.9
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +1
Query: 25 FGKMVDLSAKSNMISATIKSRLTIAIHQYNTILWRTLL 138
+G MVDL +S+++ +AI N+++WRTLL
Sbjct: 372 YGCMVDLFCRSSLLDEAYSFVTGMAIPP-NSVIWRTLL 408
>12_02_0937 -
24568475-24569145,24569215-24569319,24569419-24569991,
24570480-24570780,24570867-24572039,24572260-24572328
Length = 963
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/68 (23%), Positives = 29/68 (42%)
Frame = +2
Query: 104 TNTTRFFGEHCCPFSEEFLSGLMNAQHPKHKNRNVHIQIPYIIITNKHCLLALKLYNLKT 283
T FFG+H PF +G + + P ++ N ++I T C L + +
Sbjct: 292 TWVNHFFGDHPVPFQSFLPNGFADPKKPLYEGPNFRVEIRNGRPTAIMCGLEMTYVHTYP 351
Query: 284 YLLHRRVF 307
+++R F
Sbjct: 352 LVVYRAAF 359
>03_06_0732 -
35788417-35788485,35788776-35788871,35788963-35789148,
35789898-35789959,35790063-35790304,35790418-35791517
Length = 584
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Frame = +2
Query: 134 CCPFSEEFLSGLMNAQHPKH-----KNRNVHIQIPYIII 235
C P SE F SG+ + Q PKH N + HI Y +I
Sbjct: 401 CQPTSESFDSGVDDLQRPKHYIIWDANVHKHIYAEYAVI 439
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 39 GPISQIQYDLCHHKKSVDDRNTPIQHDSLE 128
GP++ QY L ++ +++RN P+ + L+
Sbjct: 329 GPMTPEQYQLLRWERDIEERNRPLTDEELD 358
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 27.9 bits (59), Expect = 5.1
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +3
Query: 39 GPISQIQYDLCHHKKSVDDRNTPIQHDSLE 128
GP++ QY L ++ +++RN P+ + L+
Sbjct: 353 GPMTPEQYQLLRWERDIEERNRPLTDEELD 382
>12_01_0660 +
5585172-5585356,5585717-5585761,5586942-5587026,
5587666-5587730,5587887-5587986,5588209-5588250,
5588400-5588441,5588659-5588952
Length = 285
Score = 27.5 bits (58), Expect = 6.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = -3
Query: 274 IIQF*CEKTMFVCDNNIGDLNVDISVLMFWVLCIHKATKEFFRE 143
+I F ++ NN L D SVL+F VLC+ KAT + +++
Sbjct: 45 LIVFSSRGRLYEYSNNNNYLKKDYSVLIFLVLCV-KATIDRYKK 87
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,717,111
Number of Sequences: 37544
Number of extensions: 220363
Number of successful extensions: 521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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