Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32203
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)                 32   0.32 
SB_56082| Best HMM Match : PAP2 (HMM E-Value=0.0099)                   28   4.0  
SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26)                   28   5.3  
SB_5389| Best HMM Match : UPF0020 (HMM E-Value=9.7e-36)                27   6.9  
SB_44175| Best HMM Match : zf-nanos (HMM E-Value=1.5)                  27   9.2  
SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)                      27   9.2  
SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_41077| Best HMM Match : LRR_1 (HMM E-Value=1.8e-05)
          Length = 1200

 Score = 31.9 bits (69), Expect = 0.32
 Identities = 20/63 (31%), Positives = 29/63 (46%)
 Frame = -1

Query: 198 FLCFGCCAFIRPLRNSSENGQQCSPKNRVVLVYCDRQPTFYGGRDHIGFG**VHHLAEYL 19
           F CF  C F+R +R++S     C P + V ++YC     F    +H G    V    + L
Sbjct: 564 FYCFMVCVFLRSVRSNSLRNPFCLP-DSVTMLYCALIKVFM--YNHSGKSNDVKEFKDIL 620

Query: 18  KSN 10
           K N
Sbjct: 621 KMN 623


>SB_56082| Best HMM Match : PAP2 (HMM E-Value=0.0099)
          Length = 489

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -2

Query: 503 SHKYCQKSVVQFFFIFIIYLCFDYY 429
           +H++   +VV F  +FI+ +CF+Y+
Sbjct: 463 THRFITYTVVGFNAVFIVPMCFEYF 487


>SB_19382| Best HMM Match : rve (HMM E-Value=8.4e-26)
          Length = 684

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 105 PIQHDSLENTAAHSRKNSLVAL*MHNTQNIRTEMSTFKSPILLSQT 242
           P  +  L+N AAH R++ +  L M   ++   E +  K PI L Q+
Sbjct: 257 PATNRQLDNIAAHQREDEVCQLLMKYCRDGWPEKANLKGPIKLYQS 302


>SB_5389| Best HMM Match : UPF0020 (HMM E-Value=9.7e-36)
          Length = 392

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 241 VCDNNIGDLNVDISVLMFWVLCIH 170
           VCD   G  ++ I  L+ W LC+H
Sbjct: 233 VCDPMCGGGSIPIEALLNWPLCVH 256


>SB_44175| Best HMM Match : zf-nanos (HMM E-Value=1.5)
          Length = 305

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 204 FRFLCFG-CCAFIRPLRNSSENGQQCSPKNRVVLVYCD 94
           F  L FG CC F   L     N + C+ K R+    CD
Sbjct: 107 FALLRFGDCCEFCLVLGEDEHNRKGCASKLRLTCQNCD 144


>SB_36536| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1258

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 151 FREWAAVFSKESCCIGVLRSSTDFL 77
           +R+W  V SK++C +G LR  T ++
Sbjct: 751 YRQWIEVISKQACALG-LRQLTTYI 774


>SB_18393| Best HMM Match : RCSD (HMM E-Value=2.6)
          Length = 249

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +3

Query: 24  IRQDGGPISQIQYDLCHHKKSVDDRNTPIQHDSLENTAAHSRKNSLVAL 170
           +RQ   P+ Q +  L  HK S+    TP++   +      + KN  V L
Sbjct: 186 LRQHKTPLRQHKTSLRQHKISLQQHKTPLRQHKISLRQHKTYKNGTVTL 234


>SB_17243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 778

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/38 (36%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
 Frame = -1

Query: 204 FRFLCFG-CCAFIRPLRNSSENGQQCSPKNRVVLVYCD 94
           F  L FG CC F   L     N + C+ K R+    CD
Sbjct: 301 FALLRFGDCCEFCLVLGEDEHNRKGCASKLRLTCQNCD 338


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,357,272
Number of Sequences: 59808
Number of extensions: 277370
Number of successful extensions: 704
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 703
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)