Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32203
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical ...    29   2.6  

>AF047651-2|AAL13318.1|  486|Caenorhabditis elegans Hypothetical
           protein C05D2.10b protein.
          Length = 486

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
 Frame = +3

Query: 3   TRDCFLDIRQDGGPISQIQY-----DLCHHKKSVDDRNTPIQHDSLENTAAHSRKNSLVA 167
           + +C +D  +  GP S +       D   H   V   N P  H S E    H   N+L+ 
Sbjct: 191 SNNCAVDSTEGSGPASGLLLATASGDESTHIWKVPSNNAPSDHSSEEEEEHHRDPNNLLG 250

Query: 168 L*MHNTQNIRTEMS 209
           +  HN     +E S
Sbjct: 251 VVEHNRFTSSSEKS 264


>AF047651-1|AAK67207.1|  484|Caenorhabditis elegans Hypothetical
           protein C05D2.10a protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
 Frame = +3

Query: 3   TRDCFLDIRQDGGPISQIQY-----DLCHHKKSVDDRNTPIQHDSLENTAAHSRKNSLVA 167
           + +C +D  +  GP S +       D   H   V   N P  H S E    H   N+L+ 
Sbjct: 189 SNNCAVDSTEGSGPASGLLLATASGDESTHIWKVPSNNAPSDHSSEEEEEHHRDPNNLLG 248

Query: 168 L*MHNTQNIRTEMS 209
           +  HN     +E S
Sbjct: 249 VVEHNRFTSSSEKS 262


>AF036693-1|AAK29785.1|  391|Caenorhabditis elegans Hypothetical
           protein C49A9.7 protein.
          Length = 391

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/58 (22%), Positives = 24/58 (41%)
 Frame = -3

Query: 193 MFWVLCIHKATKEFFREWAAVFSKESCCIGVLRSSTDFLWWQRSYWIWLIGPPSCRIS 20
           + W++  H+  +     +    +     I V   +T F W    Y++W  G   CRI+
Sbjct: 82  VMWIILYHRQMRSVTNYYLFNLAVADASISVF--NTGFSWSYNYYYVWKFGSFYCRIN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,019,177
Number of Sequences: 27780
Number of extensions: 225045
Number of successful extensions: 646
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)