Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32203
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc f...    29   2.5  
At4g19290.1 68417.m02843 hypothetical protein                          27   7.5  
At3g48400.1 68416.m05283 DC1 domain-containing protein similar t...    27   9.9  

>At4g21070.1 68417.m03047 BRCT domain-containing protein / zinc
           finger (C3HC4-type RING finger) family protein (BRCA1)
           contains Pfam profiles PF00533: BRCA1 C Terminus (BRCT)
           domain, PF00097: Zinc finger, C3HC4 type (RING finger),
           PF01535: PPR repeat; identical to cDNA BRCA1 GI:28372473
          Length = 1276

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +1

Query: 25  FGKMVDLSAKSNMISATIKSRLTIAIHQYNTILWRTLL 138
           FG MVDL A++  +    +   ++ + Q N ++WRTLL
Sbjct: 116 FGCMVDLLARAGQVKKAYEYIKSMPM-QPNVVIWRTLL 152


>At4g19290.1 68417.m02843 hypothetical protein 
          Length = 118

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 139 AAVFSKESCCIGVLRSSTDFLWWQRSYWIW 50
           AAV+SKE+     L  S  F+WW   + I+
Sbjct: 51  AAVYSKETLSCVCLDRSRYFMWWSMPHSIY 80


>At3g48400.1 68416.m05283 DC1 domain-containing protein similar to
           UV-B light insensitive ULI3 [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 619

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 211 HSNPLYYYHKQTLSSR 258
           HS+PLYYY +Q  S R
Sbjct: 490 HSHPLYYYRRQGKSCR 505


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,012,173
Number of Sequences: 28952
Number of extensions: 196670
Number of successful extensions: 508
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)