Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32202
         (516 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    32   0.28 
U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical pr...    27   8.0  

>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -2

Query: 137 EPTPK-ESEPFKSVVPDNKPFGYPFDRPV-LPQYFKQP 30
           +PTPK +SEPF   +P +KP   PF  P+  P+   +P
Sbjct: 7   KPTPKPKSEPFPKPMPKSKPKSEPFPSPMPFPKPMPKP 44


>U41016-8|ABC71806.1|  212|Caenorhabditis elegans Hypothetical
           protein R11G1.2 protein.
          Length = 212

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = -2

Query: 203 LMLPKGTYDGFPFQLFVFVYPYEPTPKESEPFKSVVPDNKPFGYPFDRPVLPQ-YFKQPN 27
           L++    Y G   +     Y    T  +S+ F   VP  KP GY  D P+ P+ Y     
Sbjct: 91  LLMDSDEYCGLSIENVYTRYITSETIDQSDTFGYNVP--KPIGYKGDEPIWPRSYGYSAE 148

Query: 26  MFF 18
           MFF
Sbjct: 149 MFF 151


>Z68213-1|CAA92435.2|  487|Caenorhabditis elegans Hypothetical
           protein C01F6.2 protein.
          Length = 487

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 131 TPKESEPFKSVVPDNKPFGYPFDRPVLPQ 45
           TPK  +  +  VP N+P    F RPV+P+
Sbjct: 128 TPKTPDVIRQKVPMNEPVNCVFIRPVIPK 156


>Z49130-3|CAA88968.1|  395|Caenorhabditis elegans Hypothetical
           protein T06D8.5 protein.
          Length = 395

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = -2

Query: 440 PKYDENGFP---FSLEDNWMNFYELDWFVQKVNPGQSQIT 330
           PK+ EN  P    S    W NF+E D  VQ V+   + +T
Sbjct: 279 PKFAENWIPENMLSRSPTWKNFFENDVTVQFVHRNLAYLT 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,230,724
Number of Sequences: 27780
Number of extensions: 232664
Number of successful extensions: 681
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)