Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32194
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C) 291 1e-79
At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) riboso... 288 2e-78
At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A) 287 2e-78
At3g06190.2 68416.m00712 speckle-type POZ protein-related simila... 33 0.11
At3g06190.1 68416.m00711 speckle-type POZ protein-related simila... 33 0.11
At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel... 31 0.46
At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel... 30 0.80
At5g19000.1 68418.m02257 speckle-type POZ protein-related contai... 29 2.5
At4g36190.1 68417.m05149 serine carboxypeptidase S28 family prot... 29 2.5
At2g25150.1 68415.m03008 transferase family protein similar to 1... 28 4.3
At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PU... 28 4.3
At5g54230.1 68418.m06755 myb family transcription factor (MYB49)... 27 5.7
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ... 27 5.7
At5g51270.1 68418.m06356 protein kinase family protein contains ... 27 7.5
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 27 7.5
At5g62620.1 68418.m07859 galactosyltransferase family protein co... 27 9.9
At3g46050.1 68416.m04983 kelch repeat-containing F-box family pr... 27 9.9
At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative ... 27 9.9
>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
Length = 248
Score = 291 bits (715), Expect = 1e-79
Identities = 140/171 (81%), Positives = 153/171 (89%)
Frame = +2
Query: 2 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 181
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 182 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 361
RIRELTS+VQKRF P+ SVELYAEKVA RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 362 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHV 514
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHV
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHV 175
>At3g53870.1 68416.m05951 40S ribosomal protein S3 (RPS3B) ribosomal
protein S3a - Xenopus laevis, PIR:R3XL3A
Length = 249
Score = 288 bits (706), Expect = 2e-78
Identities = 139/171 (81%), Positives = 152/171 (88%)
Frame = +2
Query: 2 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 181
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 182 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 361
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 362 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHV 514
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y+++A RHV
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDSAVRHV 175
>At2g31610.1 68415.m03862 40S ribosomal protein S3 (RPS3A)
Length = 250
Score = 287 bits (705), Expect = 2e-78
Identities = 139/171 (81%), Positives = 151/171 (88%)
Frame = +2
Query: 2 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGR 181
ISKKRKFV DGVF AELNE LTRELAEDGYSGVEVRVTP+R+EIII ATRTQ+VLGEKGR
Sbjct: 5 ISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGR 64
Query: 182 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLR 361
RIRELTS+VQKRF P SVELYAEKV RGLCAIAQAESLRYKL+GGLAVRRACYGVLR
Sbjct: 65 RIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLR 124
Query: 362 FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHV 514
F+MESGA+GCEV+VSGKLR RAKSMKF DG M+ SG P +Y++ A RHV
Sbjct: 125 FVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSSGQPTKEYIDAAVRHV 175
>At3g06190.2 68416.m00712 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 295
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 199 SELTDSASFLSEHTLCPGGHNNDLRADGSD 110
SEL + + LSEH+L GH +L ADG D
Sbjct: 255 SELLEYVARLSEHSLTSSGHRKELFADGCD 284
>At3g06190.1 68416.m00711 speckle-type POZ protein-related similar
to SPOP (novel nuclear speckle-type protein)
(SP:O43791) [Homo sapiens]; contains Pfam PF00651 :
BTB/POZ domain; contains Pfam PF00917: MATH domain
Length = 406
Score = 33.1 bits (72), Expect = 0.11
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = -3
Query: 199 SELTDSASFLSEHTLCPGGHNNDLRADGSD 110
SEL + + LSEH+L GH +L ADG D
Sbjct: 366 SELLEYVARLSEHSLTSSGHRKELFADGCD 395
>At3g48010.1 68416.m05234 cyclic nucleotide-regulated ion channel,
putative (CNGC16) similar to cyclic nucleotide and
calmodulin-regulated ion channel (cngc6) GI:4581207 from
[Arabidopsis thaliana]
Length = 705
Score = 31.1 bits (67), Expect = 0.46
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -3
Query: 298 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTL 155
FG + TSS F FY L W + +L YG L +AS LS T+
Sbjct: 309 FGDAFTNDVTSSPFFDKYFYCLWWGLRNLSSYGQSL--AASTLSSETI 354
>At4g30360.1 68417.m04314 cyclic nucleotide-regulated ion channel,
putative (CNGC17) similar to cyclic nucleotide and
calmodulin-regulated ion channel cngc5 GI:4581205 from
[Arabidopsis thaliana]
Length = 720
Score = 30.3 bits (65), Expect = 0.80
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 298 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHT 158
FG + SS F FY L W ++ L YG L+ + F+ E T
Sbjct: 333 FGNAITKNVVSSQFFERYFYCLWWGLQQLSSYGQNLS-TTMFMGETT 378
>At5g19000.1 68418.m02257 speckle-type POZ protein-related contains
Pfam PF00651 : BTB/POZ domain; contains Pfam PF00917:
MATH domain; similar to Speckle-type POZ protein
(SP:O43791) [Homo sapiens]
Length = 442
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 199 SELTDSASFLSEHTLCPGGHNNDLRADGSD 110
+EL + LSEH++ GH ++ ADG D
Sbjct: 402 TELLQYVARLSEHSVIVSGHRKEIFADGCD 431
>At4g36190.1 68417.m05149 serine carboxypeptidase S28 family protein
contains Pfam PF05577: Serine carboxypeptidase S28
Length = 493
Score = 28.7 bits (61), Expect = 2.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +3
Query: 3 FQRSENLLEMGFSRQNSMSSSLGSWPRTATPAWKCGSLPSA 125
F RS N+ F S S +L +W R P CGSL S+
Sbjct: 161 FNRSSNVENPWFFFGVSYSGALSAWFRLKFPHLTCGSLASS 201
>At2g25150.1 68415.m03008 transferase family protein similar to
10-deacetylbaccatin III-10-O-acetyl transferase
[gi:6746554], 2-debenzoyl-7,13-diacetylbaccatin
III-2-O-benzoyl transferase [gi:11559716] from Taxus
cuspidata; contains Pfam transferase family domain
PF00248; contains EST gb:R65039
Length = 461
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = -3
Query: 130 LRADGSDPHFHAGVAVLGQLPSEELIEF 47
L+ SDP GV V+ +LP + ++EF
Sbjct: 418 LKPSKSDPSMEGGVKVIMKLPRDAMVEF 445
>At1g09830.1 68414.m01105 phosphoribosylamine--glycine ligase (PUR2)
Identical to phosphoribosylamine--glycine ligase,
chloroplast [precursor] SP:P52420 from [Arabidopsis
thaliana]
Length = 532
Score = 27.9 bits (59), Expect = 4.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 377 GARGCEVVVSGKLRGQRAKSMKFVDG 454
G+ GC+VVV L G+ A VDG
Sbjct: 273 GSAGCQVVVEEFLEGEEASFFALVDG 298
>At5g54230.1 68418.m06755 myb family transcription factor (MYB49)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 319
Score = 27.5 bits (58), Expect = 5.7
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 283 SAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTL-CPGGHNNDLRADGSD 110
SA S H+ + ++ WN S + G+ + S S T GG +D + GSD
Sbjct: 243 SAAFVSDHINDGENFKAGWNFSSSMLAGTSSSSSTPLNSSSTFYVNGGSEDDRESFGSD 301
>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
contains Pfam profile PF01585: G-patch domain
Length = 781
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = +2
Query: 8 KKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRR 184
K RK G + KA + E+ ++ GYSG P+ + ++ +S+ G+K ++
Sbjct: 349 KTRKLTGIRLQKASM-EYGKKKTTRSGYSGHGKSTNPLAMDDLMFVKDPRSLSGKKNKK 406
>At5g51270.1 68418.m06356 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 819
Score = 27.1 bits (57), Expect = 7.5
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +3
Query: 111 SLPSARRSLLWPPGHRVCSERKDAESVSS 197
S P RS+ W P R ERKDA S S
Sbjct: 295 SSPETSRSVSWNPQFRDFDERKDAMSSMS 323
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 27.1 bits (57), Expect = 7.5
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = -3
Query: 298 FGLGDSAKATSSHLFSIQFYRLLWNVESLLYYGSELTDSASFLSEHTLCPGGHNNDLRAD 119
F SA A++S LF + L S T + S + PG ++ A
Sbjct: 193 FSAPSSASASNSSLFGASSSAAT-STSPLFGAPSSATGATPSFSVASSAPGSSSSIFGAT 251
Query: 118 GSDPHFHAGVAVLGQLPS 65
GS P F + G PS
Sbjct: 252 GSSPSFSVASSASGSSPS 269
>At5g62620.1 68418.m07859 galactosyltransferase family protein
contains Pfam profile: PF01762 galactosyltransferase
Length = 681
Score = 26.6 bits (56), Expect = 9.9
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 33 GFSRQNSMSSSLGSWPRTATPAWKCGSLPSARRS-LLWPPGHRVCSERKDAESVSSL 200
G R+ + SSL P T P+ K GS+ + + + W G ++ E + +++ +L
Sbjct: 99 GLRRRTRILSSLRFDPETFNPSSKDGSVELHKSAKVAWEVGRKIWEELESGKTLKAL 155
>At3g46050.1 68416.m04983 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 370
Score = 26.6 bits (56), Expect = 9.9
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +1
Query: 331 CTSCLLWCSPFHHGIWCP 384
C L+WC P WCP
Sbjct: 248 CEGVLVWCEPEEDRGWCP 265
>At1g22940.1 68414.m02867 thiamin biosynthesis protein, putative
strong similarity to hydroxymethylpyrimidine
kinase/thiamin-phosphate pyrophosphorylase (BTH1)
GI:7488455 from [Brassica napus]
Length = 522
Score = 26.6 bits (56), Expect = 9.9
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -3
Query: 169 SEHTLCPGGHNNDLRADGSDPHFHAGVAVLGQLPSEELIEFCLEN 35
S H L P + L++ SD F V G LPS E++E L+N
Sbjct: 78 SVHLLPPEFISEQLKSVLSD--FEFDVVKTGMLPSTEIVEVLLQN 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,105
Number of Sequences: 28952
Number of extensions: 247606
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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