Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32193
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase family|... 27 1.7
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe... 26 3.8
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 26 3.8
SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit... 25 6.7
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha... 25 6.7
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 25 6.7
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 6.7
SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9 |Schiz... 25 6.7
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 25 8.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 25 8.9
>SPAC513.07 |||flavonol reductase/cinnamoyl-CoA reductase
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +1
Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHV 465
+GK VLVTG +G +A +L GY V
Sbjct: 2 SGKLVLVTGVTGFIGAHVAEQLLQAGYRV 30
>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 310
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -2
Query: 200 HGTS*DGFDGPLIREPRRAEGRRCIDGAVIDARRVTSPATMIPTYCS 60
HG S GF+G ++ P R E +ID R P T+ T C+
Sbjct: 80 HGAS--GFEGAVLPPPSRKENEGHAVDFIIDTLRNNEPGTI--TICT 122
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 25.8 bits (54), Expect = 3.8
Identities = 19/57 (33%), Positives = 30/57 (52%)
Frame = +1
Query: 70 VGIMVAGDVTRRASITAPSMHRRPSARRGSLIKGPSNPSQEVPWDIIDRCALPIVLC 240
+G+ VA RA +T M + ARRGS+ + P NP+Q + + D ++ I C
Sbjct: 335 IGVPVAA--IERA-LTIRIMQTQHGARRGSVYEVPLNPTQALA--VRDALSMAIYNC 386
>SPBC1778.08c |arc3|arc21|ARP2/3 actin-organizing complex subunit
Arc21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 174
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 166 KGPSNPSQEVPWDIIDRC 219
+GP+ P+ E DIID C
Sbjct: 30 RGPAYPADESQMDIIDEC 47
>SPBC23E6.09 |ssn6||transcriptional corepressor
Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1102
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 443 SLRASALPNTLSHPVTSTALPAAV 372
+L A+ PNTL+ PVT A +AV
Sbjct: 258 ALPANGTPNTLASPVTLPAANSAV 281
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 25.0 bits (52), Expect = 6.7
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 3 YISRVSRRFKDIIFQIVVLGAVSGNHGC-RGRNSASVDHGAVDASSAFSTSR 155
+I + R+K + F V AV + C R RN+ +DHG S+F + R
Sbjct: 874 FIYGIYLRYKGLTFT-GVCQAVKFSFQCLRTRNTRKLDHGEFKKLSSFLSQR 924
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/53 (26%), Positives = 29/53 (54%)
Frame = +1
Query: 241 HALAVVLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLV 399
HA A+ L +++ H+ ++ T + ISV+ L ++H L+ T + + + V
Sbjct: 497 HANALNLFGDVSASHLFEILSATALIEGRISVSSVLQYFHALRKTPSKEIIAV 549
>SPBC15D4.07c |atg9|apg9|autophagy associated protein Atg9
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 702
Score = 25.0 bits (52), Expect = 6.7
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +1
Query: 259 LSTILNSLHISQVSVFT-LFLWFAISVTGSLWFYH 360
L+ + S I+Q+S T L LW +S +LW Y+
Sbjct: 238 LAGVTKSQCIAQMSPITYLVLWLFLSFLLALWIYY 272
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 24.6 bits (51), Expect = 8.9
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = -2
Query: 458 YPISSSLRASALPNTLSHPVTSTALPAAVTCKLW*NHKDPVTEIANHKNSVKTDT*L-IC 282
YP+SSS + +T S TST A+ T + T I+ N D L +C
Sbjct: 745 YPVSSSSTTTTSTSTGSVTTTSTTATASCTLPISYTSTPTTTSISGTCNGATFDASLYVC 804
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +1
Query: 133 RRPSARRGSLIKGPSNPSQEVPWDIIDRCALPIVLCHALAV 255
R P + G +IK P+N S EV ++ +PI H +V
Sbjct: 293 RAPWSSTGYVIKIPNNVSDEVGLELKRSDKVPIECTHNFSV 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,206,674
Number of Sequences: 5004
Number of extensions: 45397
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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