Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32193
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0894 + 22362717-22363514 34 0.059
03_06_0464 + 34126930-34127065,34127149-34127333,34127444-341276... 32 0.24
04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061 31 0.42
07_01_0501 - 3745447-3746244 30 1.3
10_06_0053 - 10110617-10111271,10112023-10112417,10112565-101126... 29 2.2
10_08_0016 + 14127200-14127615,14127723-14127816,14127904-141280... 28 3.9
04_03_1035 - 21887562-21890030 28 3.9
11_06_0724 - 26696401-26696703,26696875-26697025,26697115-266971... 27 6.8
08_02_1249 - 25584175-25584325,25584520-25584625,25584801-255849... 27 6.8
03_05_0583 - 25838016-25838684 27 6.8
03_02_0949 + 12658449-12658624,12658771-12658990,12659671-12659709 27 6.8
>07_03_0894 + 22362717-22363514
Length = 265
Score = 34.3 bits (75), Expect = 0.059
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +1
Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDA 504
AG+ +VTG +G A+A L +G V G+ + A DA
Sbjct: 22 AGRVAIVTGASRGIGRAIAAHLSALGASVVVGYASSAAKADA 63
>03_06_0464 +
34126930-34127065,34127149-34127333,34127444-34127632,
34128309-34128471,34129046-34129232,34129467-34129611
Length = 334
Score = 32.3 bits (70), Expect = 0.24
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 382 GKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDADML 513
G+ VLVTG +G+ L RRL GY V A + D L
Sbjct: 11 GETVLVTGASGFIGSCLVRRLLARGYSVHAAVLNPDDKAETDHL 54
>04_04_0084 - 22618729-22619010,22619103-22619732,22619933-22620061
Length = 346
Score = 31.5 bits (68), Expect = 0.42
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 238 CHALAVVLSTILNSLHISQVSVFTLFLWFAISVTGSLWFYHNLQVTAAGKAVLV-TGCDN 414
C AVV++T+ L ++ +V TLFL TG + AG AVLV
Sbjct: 172 CVTYAVVVATLQLFLRLTGANVTTLFLPMLSQATGC------GKAALAGHAVLVLANAGG 225
Query: 415 VLGNALARR 441
VLG+ALA R
Sbjct: 226 VLGSALAAR 234
>07_01_0501 - 3745447-3746244
Length = 265
Score = 29.9 bits (64), Expect = 1.3
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDA 504
AG+ +VTG +G +A L +G + G+ + + DA
Sbjct: 24 AGRVAIVTGASRGIGRGIAAHLSALGASLVLGYASSSAEADA 65
>10_06_0053 -
10110617-10111271,10112023-10112417,10112565-10112650,
10112973-10113021,10114164-10114290,10114372-10114526,
10114730-10114948
Length = 561
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/63 (33%), Positives = 29/63 (46%)
Frame = +3
Query: 27 FKDIIFQIVVLGAVSGNHGCRGRNSASVDHGAVDASSAFSTSRLPD*RPIEPVSGSSMGY 206
+ D I+ I VL + RGR+ + DHG A++A S P RP + Y
Sbjct: 171 YVDGIYGIKVLVDALSSSRLRGRDGSGGDHGDATAAAAASREVAPPPRPRDV-------Y 223
Query: 207 HRP 215
HRP
Sbjct: 224 HRP 226
>10_08_0016 +
14127200-14127615,14127723-14127816,14127904-14128033,
14128113-14128245,14128342-14128549,14128683-14128838
Length = 378
Score = 28.3 bits (60), Expect = 3.9
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +1
Query: 391 VLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDADM 510
+ +TG +G+ +ARRL G+++ A K ++ DM
Sbjct: 32 ISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDM 71
>04_03_1035 - 21887562-21890030
Length = 822
Score = 28.3 bits (60), Expect = 3.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 434 ASALPNTLSHPVTSTALPAAVTCKLW*N 351
A+A P +S V++ A+ AVTC LW N
Sbjct: 238 AAASPPRISRAVSTVAVGDAVTCVLWGN 265
>11_06_0724 -
26696401-26696703,26696875-26697025,26697115-26697184,
26697526-26697736,26697928-26698085,26698684-26699500
Length = 569
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +3
Query: 84 CRGRNSASVDHGAVDASSAFSTSRL 158
CRG +AS G VDA+ A +T+RL
Sbjct: 83 CRGDANASACSGCVDAAYAAATARL 107
>08_02_1249 -
25584175-25584325,25584520-25584625,25584801-25584963,
25585047-25585241,25585286-25585548,25585654-25585774
Length = 332
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 364 LQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHV 465
++ T GK V VTG + + L +RL + GYHV
Sbjct: 1 MENTTKGK-VCVTGASGYVASWLVKRLLESGYHV 33
>03_05_0583 - 25838016-25838684
Length = 222
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 185 DGFDGPLIREPRRAEGRRCIDGAVIDARRVT 93
DGF+ P+ P A GRRC G A +T
Sbjct: 127 DGFNAPMAIVPAAAGGRRCPRGGPRCAAEIT 157
>03_02_0949 + 12658449-12658624,12658771-12658990,12659671-12659709
Length = 144
Score = 27.5 bits (58), Expect = 6.8
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 414 CIRQRTGPKTGRYGISCVCWLS 479
C+R+ +G + G++ VCWL+
Sbjct: 115 CMREESGGNSPELGVASVCWLA 136
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,139,149
Number of Sequences: 37544
Number of extensions: 333082
Number of successful extensions: 933
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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