Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32193
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)                49   3e-06
SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.)              48   5e-06
SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   3e-05
SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05)             45   3e-05
SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)              44   6e-05
SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1)                    39   0.003
SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05)              37   0.011
SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)           31   0.56 
SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)                   29   1.7  
SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2)              29   3.0  
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)         28   4.0  
SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)                      28   5.3  
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 27   9.2  
SB_38063| Best HMM Match : C4 (HMM E-Value=6.7)                        27   9.2  

>SB_55589| Best HMM Match : adh_short (HMM E-Value=0.14)
          Length = 337

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 27/57 (47%), Positives = 34/57 (59%)
 Frame = +1

Query: 337 TGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDAD 507
           +G++  YHN       K VLVTGCD+ LG  LA RLD MG+HVF    T+ G  D +
Sbjct: 233 SGTVGDYHN-------KYVLVTGCDSGLGRDLAIRLDGMGFHVFGACLTQQGKRDLE 282



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
 Frame = +1

Query: 271 LNSLHISQVSVFTLFL-WFAISV---TGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALAR 438
           L  L ++   +  LF+ W ++     T  +  YHN       K VLVTGCD+  G  LA 
Sbjct: 125 LTPLQLAGAVIAVLFVAWLSLKFLPPTRRVGDYHN-------KYVLVTGCDSGFGRDLAI 177

Query: 439 RLDDMGYHVFAGFQTKAGNIDAD 507
           RLD MG+HVF    T+ G  D +
Sbjct: 178 RLDGMGFHVFGACLTQQGKQDLE 200


>SB_27290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 48.0 bits (109), Expect = 5e-06
 Identities = 23/41 (56%), Positives = 27/41 (65%)
 Frame = +1

Query: 385 KAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNIDAD 507
           K VLVTGCD+ LG  LA RLD MG+HVF    T+ G  D +
Sbjct: 49  KYVLVTGCDSGLGRDLAIRLDGMGFHVFGACLTQQGKRDLE 89


>SB_27292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = +1

Query: 271 LNSLHISQVSVFTLFL-WFAISV---TGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALAR 438
           L  L ++   +  LF+ W ++     T  +  YHN       K VLVTGCD+  G  L  
Sbjct: 352 LTPLQLAGAVIAVLFVSWLSLKFLLPTRRVGDYHN-------KYVLVTGCDSGFGRDLVI 404

Query: 439 RLDDMGYHVFAGFQTKAGNIDAD 507
           RLD MG+HVF    T+ G  D +
Sbjct: 405 RLDGMGFHVFGACLTQPGKRDLE 427


>SB_15626| Best HMM Match : adh_short (HMM E-Value=3.8e-05)
          Length = 426

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
 Frame = +1

Query: 295 VSVFTLF-LWFAISVTGSLWFYHNLQVTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFA 471
           V+VFTL  ++FA  +  S  +   L    + K VL+TGCD+  G   A  LD +G HV A
Sbjct: 4   VTVFTLLAVYFAYRLLRSFLYPKKLITDVSHKYVLITGCDSGFGRVTAVHLDGLGVHVIA 63

Query: 472 GFQTKAG 492
              T+ G
Sbjct: 64  CCLTEKG 70


>SB_28916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 44.4 bits (100), Expect = 6e-05
 Identities = 20/36 (55%), Positives = 24/36 (66%)
 Frame = +1

Query: 385 KAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAG 492
           K VL+TGCD+  G  LA RLD MG+HVF    T+ G
Sbjct: 44  KYVLITGCDSGFGRDLAIRLDGMGFHVFGACLTQQG 79


>SB_20860| Best HMM Match : HTH_10 (HMM E-Value=4.1)
          Length = 110

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 385 KAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAG 492
           K VL+TGCD   G   A RLD MG++VF    T  G
Sbjct: 34  KYVLITGCDTGFGRDTAIRLDQMGFNVFGACLTDKG 69


>SB_34617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 625

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +1

Query: 385 KAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAG 492
           K VL+TGCD   G   A RL+ MG++VF    T  G
Sbjct: 34  KYVLITGCDTGFGRDTAIRLNQMGFNVFGACLTDKG 69


>SB_5208| Best HMM Match : adh_short (HMM E-Value=1.1e-05)
          Length = 233

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +1

Query: 367 QVTAAGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAG 492
           Q+  A K VL+TG  + +G   A  LD +G+HV A  +T+ G
Sbjct: 36  QLIGADKFVLITGSSSGMGRETAIALDKLGFHVLATCRTRKG 77


>SB_23465| Best HMM Match : Pkinase_Tyr (HMM E-Value=3.1e-07)
          Length = 1118

 Score = 31.1 bits (67), Expect = 0.56
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = +3

Query: 69  SGNHGCRGRNSASVDHGAVDASSAFSTSRLPD*RPIEPVSGSSMGYHRPLCTAHCL---M 239
           +G H   GR +    HG ++  +  STSR P      P+  + +   RP  TA+     M
Sbjct: 69  TGAHVSHGRTNNHTSHGHMNTQTETSTSRQP---TAAPIRSARLVIDRPPITANNTPDSM 125

Query: 240 PRPRRRTLHDPELPAYQSS 296
               + ++H P+LP  +SS
Sbjct: 126 DNSNQPSVH-PKLPISESS 143


>SB_37776| Best HMM Match : fn3 (HMM E-Value=1.4e-22)
          Length = 1296

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 20/45 (44%), Positives = 23/45 (51%)
 Frame = -2

Query: 224  SAQRSMISHGTS*DGFDGPLIREPRRAEGRRCIDGAVIDARRVTS 90
            S +RS  S GTS  GFD    R    +EG R ID A   A R T+
Sbjct: 1015 SRRRSARSSGTSSSGFDTASSRGSYSSEGFRTIDPARAHALRNTT 1059


>SB_27220| Best HMM Match : Seryl_tRNA_N (HMM E-Value=3.2)
          Length = 517

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 5/60 (8%)
 Frame = +3

Query: 192 SSMGYHRPLCTAHCLMPRPRRRTLH---DPELP--AYQSSVGLHAIFMVCNFRNWILVVL 356
           SS    + LC   CL    RR T     DP LP   + +++  H    +CN  +W+  +L
Sbjct: 392 SSFSQDKHLCPCECLRDYERRTTEFRPVDPALPNKLFLANIRPHKPLTLCNPSHWLKGIL 451


>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)
 Frame = +1

Query: 235  LCHALAVVLS-TILNSLHISQVSVFT--LFLWFAISVTGSLWFYHNLQVT---AAGKAVL 396
            + HAL+V  S ++ ++L ++ V   T  L +  A+SVT +L F H L VT   +   A+ 
Sbjct: 1527 VAHALSVTHSLSVTHALSVTHVLSLTHALSVTHALSVTHALSFAHALSVTQSLSVTHALS 1586

Query: 397  VTGCDNV 417
            VT   NV
Sbjct: 1587 VTHAPNV 1593


>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
          Length = 231

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 69  SGNHGCRGRNSASVDHGAVD 128
           +G H CRGR +A VD+G  D
Sbjct: 185 TGIHSCRGRCTAGVDYGRKD 204


>SB_54174| Best HMM Match : EGF (HMM E-Value=0.21)
          Length = 658

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -2

Query: 431 SALPNTLSHPVTSTALPAAVTCKL 360
           SA PNT +HP TS  + AA T ++
Sbjct: 626 SATPNTTTHPPTSGPISAAFTTRV 649


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 101  RVTSPATMIPTYCSEHDNLKND-VFESPRNS 12
            R+T P ++   Y  EH++ ++D +F  PRNS
Sbjct: 1634 RLTDPRSLRALYSHEHNDSRDDPLFYCPRNS 1664


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 69  SGNHGCRGRNSASVDHGAVD 128
           +G H CRGR +A +D+G  D
Sbjct: 118 TGIHSCRGRCTAGMDYGRKD 137


>SB_38063| Best HMM Match : C4 (HMM E-Value=6.7)
          Length = 364

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 101 RVTSPATMIPTYCSEHDNLKND-VFESPRNS 12
           R+T P ++   Y  EH++ ++D +F  PRNS
Sbjct: 158 RLTDPRSLRALYSHEHNDSRDDPLFYCPRNS 188


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,309,396
Number of Sequences: 59808
Number of extensions: 371164
Number of successful extensions: 1022
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)