Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32193
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   1.9  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   1.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   5.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   7.5  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   10.0 

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 102 PSYVPGNHD 76
           P++VPGNHD
Sbjct: 340 PNWVPGNHD 348


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.0 bits (47), Expect = 1.9
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -1

Query: 102 PSYVPGNHD 76
           P++VPGNHD
Sbjct: 340 PNWVPGNHD 348


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = +1

Query: 346 LWFYHNLQVTAAGKAVLVTGC 408
           LW YH+  +    K  LV  C
Sbjct: 112 LWLYHDKTLLYMSKLTLVLSC 132


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -1

Query: 87  GNHDSHLLLRAR 52
           GN D++LLL+AR
Sbjct: 261 GNEDANLLLKAR 272



 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 159 GASTC*RPTMHXXXXXXRSPSYVPGNH 79
           G S C  P ++        PSY P  H
Sbjct: 295 GRSACHSPGVYPSTAGFLPPSYHPHQH 321


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 413 LSHPVTSTALPAAVT 369
           +SHP+T    PAAV+
Sbjct: 101 VSHPLTGDLSPAAVS 115


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 99  SYVPGNHDSH 70
           ++V GNHD+H
Sbjct: 347 NWVSGNHDNH 356


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,027
Number of Sequences: 438
Number of extensions: 3026
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)