Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32193
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SD...    30   0.80 
At5g18210.1 68418.m02137 short-chain dehydrogenase/reductase (SD...    29   1.4  
At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein si...    29   1.9  
At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SD...    29   2.5  
At3g50580.1 68416.m05532 proline-rich family protein contains pr...    28   3.2  
At1g52880.1 68414.m05979 no apical meristem (NAM) family protein...    28   3.2  
At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)           27   5.7  
At4g23530.1 68417.m03391 expressed protein                             24   8.5  
At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR...    27   9.9  
At1g23960.1 68414.m03025 expressed protein contains Pfam profile...    27   9.9  

>At3g03980.1 68416.m00419 short-chain dehydrogenase/reductase (SDR)
           family protein similar to short-chain type
           dehydrogenase/reductase SP:Q08632 [Picea abies]
          Length = 270

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +1

Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNID 501
           AG+  +VTG    +G A+A  L ++G  +   + +KA + +
Sbjct: 15  AGRVAIVTGSSRGIGRAIAIHLAELGARIVINYTSKAADAE 55


>At5g18210.1 68418.m02137 short-chain dehydrogenase/reductase (SDR)
           family protein similar to short-chain type
           dehydrogenase/reductase SP:Q08632 [Picea abies]
          Length = 277

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQTKAGNID 501
           AG+  +VTG    +G A+A  L ++G  +   + T++   D
Sbjct: 9   AGRVAIVTGSSRGIGRAIAIHLAELGAKIVINYTTRSTEAD 49


>At2g30710.1 68415.m03746 RabGAP/TBC domain-containing protein
           similar to SP|Q08484 GTPase-activating protein GYP1
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF00566: TBC domain
          Length = 440

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -2

Query: 134 RCIDGAVIDARRVTSPATMI-PTY---CSEHDNLKNDVFESPRNSRD 6
           R I G V+  RR   P   I PTY    SE+D  +N++FESP    D
Sbjct: 30  RSIPGKVLLTRRSDPPPYPISPTYQRSLSENDAGRNELFESPVEVED 76


>At3g04000.1 68416.m00421 short-chain dehydrogenase/reductase (SDR)
           family protein similar to SP|Q08632 Short-chain type
           dehydrogenase/reductase (EC 1.-.-.-) {Picea abies};
           contains Pfam:PF00106 oxidoreductase, short chain
           dehydrogenase/reductase family
          Length = 272

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 379 AGKAVLVTGCDNVLGNALARRLDDMGYHVFAGFQT 483
           AG+  +VTG    +G A+A  L ++G  V   + T
Sbjct: 15  AGRVAIVTGSSRGIGRAIAIHLAELGARVVVNYST 49


>At3g50580.1 68416.m05532 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 265

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 109 SITAPSMHRRPSARRGSLIKGPSNPS--QEVPWDIIDRCAL---PIVLC 240
           S+  P+  + P          PSNP   Q+ PW+ I+RC +   P+ +C
Sbjct: 147 SLPPPTPKKSPPPPPSHHSSSPSNPPHHQQNPWEHIERCMINMGPVGMC 195


>At1g52880.1 68414.m05979 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM (no apical meristem) GB:CAA63101 from
           [Petunia x hybrida]; identical to cDNA NAC domain
           protein GI:4325285
          Length = 320

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 353 NHKDPVTEIANHKNSVKTDT*LICREFRIVESTTARAWH 237
           N    + +  N KNS++ D  ++CR ++   ST +R  H
Sbjct: 149 NKPTHICDFGNKKNSLRLDDWVLCRIYKKNNSTASRHHH 187


>At4g36870.1 68417.m05228 BEL1-like homeobox 2 protein (BLH2)
          Length = 638

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/62 (27%), Positives = 25/62 (40%)
 Frame = +3

Query: 129 ASSAFSTSRLPD*RPIEPVSGSSMGYHRPLCTAHCLMPRPRRRTLHDPELPAYQSSVGLH 308
           A   F  +  P  +P  P S +S   H    T H L+P P   T H      Y + + +H
Sbjct: 138 AMQLFLMNPPPPQQPPSPSSTTSPRSHHNSSTLHMLLPSPSTNTTHHQN---YTNHMSMH 194

Query: 309 AI 314
            +
Sbjct: 195 QL 196


>At4g23530.1 68417.m03391 expressed protein
          Length = 396

 Score = 23.8 bits (49), Expect(2) = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 112 ITAPSMHRRPSARRGSLIKGPSNPSQEVPW 201
           IT+PS    P +   S +  PS+P   +PW
Sbjct: 51  ITSPSP---PPSSSSSAVSQPSDPILSIPW 77



 Score = 21.4 bits (43), Expect(2) = 8.5
 Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 178 NPSQE-VPWDIIDRCALPIVLCHALAVVLSTILNSLHISQVSVFTL 312
           +PS E V  +++DR    + LC+A+   + ++  S   ++++V  L
Sbjct: 104 SPSLERVLPEMLDRILKALDLCNAVVNGIDSVRQSRRFAEIAVTAL 149


>At5g22690.1 68418.m02651 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1008

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 318 MVCNFRNWILVVLP*FTGNGCRQSSTCHWV 407
           M  ++RNW+  V P F+G   R +   H++
Sbjct: 1   MALSYRNWLYDVFPSFSGEDVRVTFLSHFL 30


>At1g23960.1 68414.m03025 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 302

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 8/92 (8%)
 Frame = +1

Query: 223 LPIVLCHALAVVLSTILNSLHISQVSVFTLF---LWF----AISVTGSLWFYHNLQVTAA 381
           L +VLC     + +T L+ L I +V++ T     L +    A S    +WF   L+    
Sbjct: 200 LELVLCAHDKFITNTDLSRLSIEKVAIETSIGDALLYERLEAKSANVYIWF-KRLEKPRV 258

Query: 382 GKAVLVTGCDNVLGNALARR-LDDMGYHVFAG 474
            + V VTG D V   A+ RR +D  GY    G
Sbjct: 259 PQQVFVTGMD-VERKAIIRRVMDSTGYLTLVG 289


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,798,039
Number of Sequences: 28952
Number of extensions: 250536
Number of successful extensions: 669
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)