Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32191
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc... 30 0.24
SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces ... 28 0.72
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2... 27 2.2
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo... 27 2.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 27 2.2
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 27 2.2
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 26 2.9
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 26 3.8
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 3.8
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces... 26 3.8
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos... 25 5.1
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 25 5.1
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 25 5.1
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S... 25 5.1
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz... 25 6.7
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c... 25 8.9
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 25 8.9
>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
Shk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 658
Score = 29.9 bits (64), Expect = 0.24
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = -1
Query: 255 SALSNS-HLRPNGRLRSSACIRGSTRAPVPSALNGASP 145
SALS+S HL+P SS+ + S AP P A + +SP
Sbjct: 231 SALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSP 268
>SPAC31G5.04 |||homoisocitrate dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 362
Score = 28.3 bits (60), Expect = 0.72
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 164 ADGTGARVLPRIHALLRSRPLGRRCEFDKADQSTVYNVVRRT 289
ADG G V+P L+ + P + +FD D + RT
Sbjct: 14 ADGIGKEVVPAARRLMENLPAKHKLKFDFIDLDAGWGTFERT 55
>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
Byr2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 659
Score = 26.6 bits (56), Expect = 2.2
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -1
Query: 159 NGASPHQYRMVRVTRASPCPAHRD 88
N +SP + R++ V + PCP+ D
Sbjct: 134 NSSSPERDRLIIVPKEKPCPSFED 157
>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 437
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -3
Query: 298 DTNCPAYDIIHCALISFIKFASPSQW 221
+TNC Y +I+ A + +F SP+ W
Sbjct: 267 ETNCLYYAVIYLAPGDYHRFHSPTDW 292
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 410 LLVYNVVLSPAGFLEDTSRFVALGNRFVTFFRY 508
L V + +LSP G ++TS F+ LGN ++F Y
Sbjct: 19 LFVDDQLLSPIGDSKNTSSFIYLGNP-ISFHEY 50
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 26.6 bits (56), Expect = 2.2
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = -3
Query: 352 VQNFKTTCLSDSLKPQGVDTNCPAYDIIHCALISFIKFASP 230
V NF + DS+ P + CP Y I H S + SP
Sbjct: 272 VLNFDFKLVEDSILPLELSPGCPFYKIWHIRNTSCQSWPSP 312
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 26.2 bits (55), Expect = 2.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 469 KTRCIFKESGWAKNNVIDKKKVSDYFE 389
KT IFK++G+A NV+D S F+
Sbjct: 176 KTSPIFKKNGYATENVVDPISSSPRFK 202
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 3.8
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 4/75 (5%)
Frame = -3
Query: 328 LSDSLKPQGVDTNCPAYDIIHCAL--ISFIKFASPSQWSTSEQCVYPRQYAGACPV--CP 161
+ + LK VDT P+ + A +SF+KF + + Y + P C
Sbjct: 134 IPEKLKNVKVDTENPSAEPYTKAKGDVSFLKFQKRLSRAPDQIMRYYHATSNEFPGLWCN 193
Query: 160 ERCFAPSVPNGSCNA 116
C S+PN +C A
Sbjct: 194 NECIPSSIPNCACGA 208
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.8 bits (54), Expect = 3.8
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 457 IFKESGWAKNNVIDKKKVSDYFEQFAKDNP 368
IF+E G +N+ D DY + DNP
Sbjct: 13 IFEEKGSTSSNISDNCASRDYDVNISSDNP 42
>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 25.8 bits (54), Expect = 3.8
Identities = 9/34 (26%), Positives = 18/34 (52%)
Frame = -1
Query: 129 VRVTRASPCPAHRDHVQTSEHLSEQCINAAINFD 28
+ TR+ PCP H + T + + E +++ N +
Sbjct: 458 IAFTRSLPCPKHMVWMDTRDEIYEAIMDSGYNME 491
>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 891
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -3
Query: 394 FEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGV 299
FEQF DNP++ +T+ ++ K GV
Sbjct: 439 FEQFLYDNPEYQKNTILIQTSTFTEEQKEYGV 470
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 222 HWDGDANLIKLIRAQCIMSYAGQFVSTP 305
HW +L+ + CI +AGQ +STP
Sbjct: 1163 HWYSLMSLMGTSQGICIPRHAGQVLSTP 1190
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.4 bits (53), Expect = 5.1
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Frame = +1
Query: 88 ITVCGAGRGTRYTNHSVLMGRST---VQGRRDRRPRTASDTRTAPKSTIGTEMR 240
I V + R T H+VLM +ST +Q + RR T S + K T+ + R
Sbjct: 130 IKVDPSARRTSSRMHTVLMAQSTETRLQEAKPRRKYTVSASANRQKGTMTQQQR 183
>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 609
Score = 25.4 bits (53), Expect = 5.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 100 GAGRGTRYTNHSVLMGRSTVQGRRDRRPRTA 192
G GRG + HSV+ + GR R A
Sbjct: 412 GQGRGQEFAKHSVISSTLSTTGRSAERKNIA 442
>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
Utp5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 666
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/33 (27%), Positives = 22/33 (66%)
Frame = -3
Query: 454 FKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSA 356
F+++G +K+N D++ +S Y+E + + + S+
Sbjct: 580 FRKAGGSKDNAEDEEPISIYYEGYEESMDEASS 612
>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 958
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/60 (23%), Positives = 23/60 (38%)
Frame = -3
Query: 451 KESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCPAYDI 272
+E+GW ++ ++ F+ + DWSA + C V N PA I
Sbjct: 387 RETGWVFSSTETNVPWYHFYSLFSLRDTDWSALLATVPEMCALTFFGILHVPINVPALAI 446
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 69 HLSEQCINAAINFDNSV 19
HLSE+C NA++N ++
Sbjct: 287 HLSEECSNASVNAPKAI 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,073
Number of Sequences: 5004
Number of extensions: 42714
Number of successful extensions: 147
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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