Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32191
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0767 + 27121761-27123335,27123701-27123910,27124843-271249... 33 0.18
06_03_1306 + 29208882-29209547,29209641-29209854,29209947-292100... 31 0.42
06_03_1455 + 30264023-30264174,30265930-30266070,30266328-302664... 29 1.7
02_04_0206 + 20916063-20919669,20919816-20920014,20920935-209210... 29 1.7
03_02_0744 + 10880496-10880891 29 2.2
08_02_0099 + 12343518-12343678,12344193-12344393,12344669-123448... 29 2.9
07_03_0741 - 21107566-21107838,21107964-21108102,21108189-211084... 29 2.9
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644... 28 3.9
03_03_0136 - 14757965-14758579 28 5.1
04_04_0588 - 26412487-26413887 27 6.8
03_05_0927 - 28874819-28877098,28877689-28877691 27 6.8
08_01_0793 - 7685702-7686955 27 8.9
04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964 27 8.9
04_03_0187 + 12436934-12437108,12438020-12439044 27 8.9
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 27 8.9
>11_06_0767 + 27121761-27123335,27123701-27123910,27124843-27124911,
27125387-27125656,27126027-27126377,27126480-27126757,
27126887-27128330
Length = 1398
Score = 32.7 bits (71), Expect = 0.18
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +3
Query: 129 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 257
P G + HR G+TG+A A + YT SE D W +L+K++
Sbjct: 926 PTGIEDYVHRIGRTGRAGATGVSYTFFSEQD-WKYAGDLVKVL 967
>06_03_1306 + 29208882-29209547,29209641-29209854,29209947-29210023,
29210132-29210171,29210254-29210323,29210419-29210488,
29210747-29210995,29212810-29214700,29215458-29215771
Length = 1196
Score = 31.5 bits (68), Expect = 0.42
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -3
Query: 457 IFKESGWAKNNVIDKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLSDSLKPQGVDTNCP-- 284
+F WA +++ + +E DN WSAA K T ++ + NCP
Sbjct: 921 MFSSPEWASSDLASRSSFRHVYEVVKTDNAFWSAAADILKLTDPLITVLYKLEADNCPIG 980
Query: 283 -AYDIIHCA 260
YD + CA
Sbjct: 981 ILYDAMDCA 989
>06_03_1455 +
30264023-30264174,30265930-30266070,30266328-30266430,
30266510-30266659,30267184-30267229,30267383-30267738
Length = 315
Score = 29.5 bits (63), Expect = 1.7
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 85 MITVCGAGRGTRYTNHSVLMGRS-TVQGRRDRRPRT 189
M TV A R +Y N SV+ GR+ TV+ R RPRT
Sbjct: 155 MDTVEDAERCIKYLNQSVMEGRNITVEKSRRGRPRT 190
>02_04_0206 + 20916063-20919669,20919816-20920014,20920935-20921074,
20921184-20921263,20922759-20922875,20923089-20923136,
20923509-20923601,20923881-20923958,20924114-20924218,
20924543-20925212,20925253-20925350,20925887-20925963,
20926035-20926117,20926208-20926287,20927060-20927139,
20927698-20927743,20928709-20929181,20929234-20929579
Length = 2139
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/74 (28%), Positives = 37/74 (50%)
Frame = -1
Query: 252 ALSNSHLRPNGRLRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCPAHRDHVQTS 73
AL NS PNG +++ C+ G+ + S+L Q+ + VT+ + CP + H +
Sbjct: 895 ALFNS---PNGAHKAAQCVEGNHTLKLTSSL--TDTQQFGLENVTQET-CPGY-IHGECG 947
Query: 72 EHLSEQCINAAINF 31
SE+ +N + F
Sbjct: 948 TSTSERSLNNIVGF 961
>03_02_0744 + 10880496-10880891
Length = 131
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 478 ECDKTRCIFKESGWAKNNVIDKKKVSDYFEQFAKDNPD 365
EC +E A ++ D+KK SD E++ KDNP+
Sbjct: 85 ECAAAWDEVEELSAAASHARDRKKDSDPLEEYCKDNPE 122
>08_02_0099 +
12343518-12343678,12344193-12344393,12344669-12344846,
12347201-12347463,12347596-12347874,12348045-12349182,
12349303-12349473
Length = 796
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 205 CVYPRQYAGACPVCPERCFAPSVPNGSCNA 116
CV+ + C CP APS PNG+C++
Sbjct: 381 CVFGLPWLAPCRPCPT-AGAPSPPNGTCHS 409
>07_03_0741 -
21107566-21107838,21107964-21108102,21108189-21108426,
21108629-21108836,21108945-21109066,21109146-21109271,
21109356-21109774,21109844-21110268
Length = 649
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 250 FIKFASPSQWSTSEQCVYPRQYAGACPV 167
F+ F SP QW S+ YP Q + + V
Sbjct: 127 FMDFLSPDQWQVSQMIWYPEQASASVDV 154
>01_01_0827 +
6443319-6446085,6446317-6446407,6446502-6448017,
6448164-6448243,6449045-6449129,6449221-6449312,
6449388-6449456,6449544-6449580,6449662-6449744,
6450427-6450873,6450978-6451014,6451101-6451158,
6451243-6451382,6451610-6451675,6451794-6451908,
6453261-6453299,6453482-6453543
Length = 1927
Score = 28.3 bits (60), Expect = 3.9
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 8/70 (11%)
Frame = -1
Query: 243 NSHLRPNGRLRSSACIRGSTRAP----VPSA----LNGASPHQYRMVRVTRASPCPAHRD 88
N H P + S CI + VP A +NG PH YR+ + P P H +
Sbjct: 332 NGHRMPENPITPSHCIERAALKEHLNHVPHAKAAVMNGQMPHSYRLAQ-NPILP-PNHIE 389
Query: 87 HVQTSEHLSE 58
Q E+LSE
Sbjct: 390 GYQVMENLSE 399
>03_03_0136 - 14757965-14758579
Length = 204
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = +3
Query: 96 VRGRARHALHEPFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGD 236
+RGRA + +H F DG+ G G APA EV+ D D
Sbjct: 35 LRGRA-YLVHHVFYEDGSASADGGGGVAPASRASIAALREVEEEDDD 80
>04_04_0588 - 26412487-26413887
Length = 466
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -1
Query: 228 PNGRLRSSACIRGSTRAPVPSALNGASPHQYRMVRVTRASPCPAHRDHV 82
P+ LRS++ + S+ AP + AS R++ + +SP P H+
Sbjct: 56 PDRLLRSASSLSTSSSAPPSPRSSSASDAPVRVISSSPSSPSPPSARHI 104
>03_05_0927 - 28874819-28877098,28877689-28877691
Length = 760
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 418 DKKKVSDYFEQFAKDNPDWSAAVQNFKTTCLS 323
D +K+ YF++ +NP +S A Q K CL+
Sbjct: 316 DTQKLLGYFKRLNAENPTFSYAFQVEKNDCLT 347
>08_01_0793 - 7685702-7686955
Length = 417
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 246 SNSHLRPNGRLRSSACIRGSTRAPVPSALNGASPHQ 139
S RP G+ ++ A ++G + P PS L G P Q
Sbjct: 308 SRKEKRPEGQKKAKAKLKGKGKKPAPSPL-GDQPSQ 342
>04_04_0501 - 25681880-25683721,25683809-25684075,25685347-25685964
Length = 908
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = -1
Query: 210 SSACIRGSTRAPVPSALN---GASPHQYRMVRVTRASPCP 100
+++C++ T + +PS N PH +R VR S CP
Sbjct: 697 TTSCLQALTLSVLPSLENVLVAPMPHNFRYVRKLSISQCP 736
>04_03_0187 + 12436934-12437108,12438020-12439044
Length = 399
Score = 27.1 bits (57), Expect = 8.9
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 246 SNSHLRPNGRLRSSACIRGSTRAPVPSALNGASPHQ 139
S RP G+ ++ A ++G + P PS L G P Q
Sbjct: 290 SRKEKRPEGQKKAKAKLKGKGKKPAPSPL-GDQPSQ 324
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +3
Query: 129 PFGTDGAKHRSGQTGQAPAYCLGYTHCSEVDHWDGDANLIKLI 257
P G + HR G+TG+A A + YT + D A+LIK++
Sbjct: 472 PTGIEDYVHRIGRTGRAGATGVAYTFFCDQDS-KYAADLIKIL 513
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,014,979
Number of Sequences: 37544
Number of extensions: 305183
Number of successful extensions: 993
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -