Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32191
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   7.5  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   10.0 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   10.0 
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   10.0 
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   10.0 

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 454 FKESGWAKNNV 422
           FK + WAKNN+
Sbjct: 125 FKTALWAKNNI 135


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = -3

Query: 454 FKESGWAKNNV 422
           FK + WAKNN+
Sbjct: 125 FKTALWAKNNI 135


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -3

Query: 457 IFKESGWAKNNVIDKKKV 404
           I+   GW + NV++K+ V
Sbjct: 177 IWTPHGWMRRNVLNKQHV 194


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 12/44 (27%), Positives = 17/44 (38%)
 Frame = +3

Query: 192 LGYTHCSEVDHWDGDANLIKLIRAQCIMSYAGQFVSTPCGFKLS 323
           L  T    V+ W   + +      Q    +AG F S    FKL+
Sbjct: 185 LHLTEYKLVEKWVNSSEIFYTTSQQYYGHFAGNFSSISITFKLA 228


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 125 RTIRY*WGEAPFRADGTGARVLPRIHAL 208
           R IRY W E P     +    LP+   L
Sbjct: 164 RDIRYKWNEGPNSVGVSNEVSLPQFKVL 191


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 9/23 (39%), Positives = 10/23 (43%)
 Frame = -3

Query: 175 CPVCPERCFAPSVPNGSCNACLA 107
           C  CP   F     + SC AC A
Sbjct: 262 CTECPIGKFKHEAGSHSCEACPA 284


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 125 RTIRY*WGEAPFRADGTGARVLPRIHAL 208
           R IRY W E P     +    LP+   L
Sbjct: 103 RDIRYKWNEGPNSVGVSNEVSLPQFKVL 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,164
Number of Sequences: 438
Number of extensions: 3016
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)