Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32186
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 0.95
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 1.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.7
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 2.9
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 26 2.9
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 26 3.8
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 25 6.7
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 25 6.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 25 8.9
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 25 8.9
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 25 8.9
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 25 8.9
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 27.9 bits (59), Expect = 0.95
Identities = 16/55 (29%), Positives = 32/55 (58%)
Frame = +3
Query: 342 DELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVRE 506
DE+ +A+ +++ K L++ +E QV++D+A + K+ +K+E RV E
Sbjct: 175 DEIFESLRYAKALDQI-KGLKRD-QETQVKVDQATLTHYRSDKERAEKIELRVHE 227
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.5 bits (58), Expect = 1.3
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +3
Query: 381 EKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVREL 509
E+ K +E++ ++ + RL AN KKA+++L Q+ REL
Sbjct: 354 EEFHKLIEERQRQHEERLKRINAN-----KKALEELNQKKREL 391
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 1.7
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 324 DAARLADELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVR 503
+A RLA++ + A+ QE+ RK E+Q + + + E K +K QK ++R +
Sbjct: 616 EAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQQELERQKREEK--QKQKEREK 673
Query: 504 ELE 512
+L+
Sbjct: 674 KLK 676
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 2.9
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Frame = +3
Query: 63 SERRANALQNELEESRTLLEQADRARRQAE---QELSDAHE 176
SE+R N L+ +L ++ TLL + + +SD+HE
Sbjct: 136 SEKRVNQLKKQLVDAETLLSSTQHQLTELKDVMHSMSDSHE 176
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 26.2 bits (55), Expect = 2.9
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 340 RTSSAPSRITLRPRRNSARLSSNKSRNSK 426
R S+PS++++RP+ S RL + ++ ++
Sbjct: 746 RMVSSPSKVSIRPKMKSVRLLAREASEAR 774
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/48 (31%), Positives = 29/48 (60%)
Frame = +3
Query: 369 AQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVRELE 512
A+ +EKL K EQ+++EL+ + ++ EA L+ + +K+ EL+
Sbjct: 104 AELEEKLAKRREQELQELE-KQEKIEAEILESRLQEQRKVALDELELD 150
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 25.0 bits (52), Expect = 6.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 342 DELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANAL 458
+ LR+ Q+ A+ + KA Q++ +D AEANAL
Sbjct: 164 NSLRSAQELAREDLEAHKAKLQELLRRGTPMDLAEANAL 202
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.0 bits (52), Expect = 6.7
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 372 QTQEKLRKALEQQIKELQVRLDEAEANALKGGK 470
Q EK + ALE++ + ++ +E E+ KGGK
Sbjct: 45 QEAEKRKAALERKAERERLEKEEMESLPSKGGK 77
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 324 DAARLADELRAEQDHAQTQEKLRKALEQQIKELQ 425
DA+RL R + +EK+RK L +++ ++Q
Sbjct: 400 DASRLTQRGRRDPGLLLREEKIRKRLSRELPKVQ 433
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 24.6 bits (51), Expect = 8.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 342 DELRAEQDHAQTQEKLRKALEQQIKELQVRLDEAEANALKGGKKAIQKLEQRVREL 509
DEL + Q+ + LEQQI +L L E N ++ K ++K +++ +L
Sbjct: 528 DELHEAINSKNVQQSRSEELEQQISKLTDNLQEYR-NTVRELKLDLEKSKKKNEDL 582
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 69 RRANALQNELEESRTLLEQADRARRQAEQE 158
RR + + E R L E+ + ARRQ EQ+
Sbjct: 163 RRIDLVLARKEAKRKLKEKEEEARRQKEQQ 192
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 54 LGISERRANALQNELEESRTLLEQADRARRQAEQELSDAHE 176
L I++ R L N+L+E + L + D +A + HE
Sbjct: 862 LTITKERVLQLTNDLQEEQALAHEKDILVERANSRVEVVHE 902
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.121 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,075
Number of Sequences: 5004
Number of extensions: 13515
Number of successful extensions: 95
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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