Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32181
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||...   107   1e-24
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc...    57   2e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    53   2e-08
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb...    46   3e-06
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    33   0.025
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe...    27   1.7  
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    25   5.1  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.9  

>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 375

 Score =  107 bits (257), Expect = 1e-24
 Identities = 53/75 (70%), Positives = 54/75 (72%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
           GGT MYPGIADRMQKE                PERKYSVWIGGSILASLS FQQMW SK+
Sbjct: 301 GGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGSILASLSTFQQMWISKQ 360

Query: 335 EYDESGPGIVXRKXF 291
           EYDESGPGIV RK F
Sbjct: 361 EYDESGPGIVYRKCF 375


>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
           Arp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 56.8 bits (131), Expect = 2e-09
 Identities = 29/68 (42%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYS--VWIGGSILASLSXFQQMWXS 342
           GGT + PG+++R+Q E                     S  VW GGSILASL  FQ +W S
Sbjct: 351 GGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLWVS 410

Query: 341 KEEYDESG 318
           K+EYDE G
Sbjct: 411 KQEYDEVG 418


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXP--ERKYSVWIGGSILASLSXFQQMWXS 342
           GGT +  G + R+Q E                   ER Y+ W+GGSIL+SL  F Q+W S
Sbjct: 354 GGTSLMQGFSLRLQNELSKLYPGSRLKIHASGHVVERSYASWLGGSILSSLGTFHQLWIS 413

Query: 341 KEEYDESG 318
           ++EY+E G
Sbjct: 414 RQEYEEHG 421


>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 46.0 bits (104), Expect = 3e-06
 Identities = 24/75 (32%), Positives = 39/75 (52%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
           GG+ +  G  +R   E                PER ++ W+GGSILASLS F+++  + E
Sbjct: 306 GGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLITSE 365

Query: 335 EYDESGPGIVXRKXF 291
           EY ++   ++ R+ F
Sbjct: 366 EY-KNDQNVIFRRRF 379


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 33.1 bits (72), Expect = 0.025
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -2

Query: 413 RKYSVWIGGSILASLSXFQQMWXSKEEYDESGPGIVXR 300
           ++ +VW GGS+LA    F     +K +Y+E G  I  R
Sbjct: 382 QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419


>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 16/67 (23%), Positives = 24/67 (35%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
           GG    PG+  R+++E                       W G S  +    F+    ++E
Sbjct: 642 GGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKFKAAKVTRE 701

Query: 335 EYDESGP 315
           EY E GP
Sbjct: 702 EYLEKGP 708


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -1

Query: 447 DHQDQDHRSPREEVLRMDRWIHPGFPVXLP 358
           D  D+  R+  E VLRM R++ PG     P
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPGVEPGTP 528


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 406 YFLSGGAMILILMVXGARAVISFCILSAIPGY 501
           Y +SGGA +        +A +S CI   +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,392,178
Number of Sequences: 5004
Number of extensions: 18741
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)