Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32181
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              76   2e-16
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   10.0 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 76.2 bits (179), Expect = 2e-16
 Identities = 38/58 (65%), Positives = 39/58 (67%)
 Frame = -2

Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXS 342
           GGT MYPGIADRMQKE                PE+KYSVWIGGSILASLS FQQMW S
Sbjct: 76  GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGSILASLSTFQQMWIS 133


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -1

Query: 423 SPREEVLRMDRWIHPGFPV 367
           +P  + + +  WIHP  P+
Sbjct: 531 NPLTDTVPIHTWIHPWLPL 549


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 30  LIKINKLTVLFINYIW 77
           L+++ KLTV   N +W
Sbjct: 115 LLELKKLTVQTFNSVW 130


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,178
Number of Sequences: 438
Number of extensions: 1517
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)