Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32181
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 99 2e-21
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 99 2e-21
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 99 2e-21
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 99 2e-21
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 98 3e-21
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 98 3e-21
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 94 6e-20
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 94 6e-20
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 89 2e-18
At2g42170.1 68415.m05219 actin, putative similar to actin 2 [Ara... 84 6e-17
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 73 2e-13
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 64 7e-11
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 63 9e-11
At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identica... 47 9e-06
At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly i... 44 8e-05
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 37 0.007
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 35 0.028
At3g24210.1 68416.m03038 ankyrin repeat family protein contains ... 27 5.7
At3g50690.1 68416.m05546 leucine-rich repeat family protein 27 9.9
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GG+ M+PGIADRM KE PERKYSVWIGGSILASLS FQQMW SK
Sbjct: 303 GGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKS 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+PGIADRM KE PERKYSVWIGGSILASLS FQQMW +K
Sbjct: 303 GGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+PGIADRM KE PERKYSVWIGGSILASLS FQQMW +K
Sbjct: 303 GGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 99.1 bits (236), Expect = 2e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+PGIADRM KE PERKYSVWIGGSILASLS FQQMW +K
Sbjct: 303 GGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 98.3 bits (234), Expect = 3e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+ GIADRM KE PERKYSVWIGGSILASLS FQQMW SK
Sbjct: 303 GGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDE+GPGIV RK F
Sbjct: 363 EYDEAGPGIVHRKCF 377
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 98.3 bits (234), Expect = 3e-21
Identities = 49/75 (65%), Positives = 51/75 (68%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+ GIADRM KE PERKYSVWIGGSILASLS FQQMW SK
Sbjct: 303 GGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDE+GPGIV RK F
Sbjct: 363 EYDEAGPGIVHRKCF 377
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 93.9 bits (223), Expect = 6e-20
Identities = 47/75 (62%), Positives = 49/75 (65%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+ GI DRM KE PERKYSVWIGGSILASLS FQQMW +K
Sbjct: 303 GGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 93.9 bits (223), Expect = 6e-20
Identities = 47/75 (62%), Positives = 49/75 (65%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+ GI DRM KE PERKYSVWIGGSILASLS FQQMW +K
Sbjct: 303 GGTTMFGGIGDRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKA 362
Query: 335 EYDESGPGIVXRKXF 291
EYDESGP IV RK F
Sbjct: 363 EYDESGPSIVHRKCF 377
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 88.6 bits (210), Expect = 2e-18
Identities = 44/75 (58%), Positives = 47/75 (62%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+PGIADRM KE PERKYSVW+GGSILASLS F MW +K
Sbjct: 304 GGTTMFPGIADRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITKA 363
Query: 335 EYDESGPGIVXRKXF 291
EYDE G IV RK F
Sbjct: 364 EYDEQGGAIVHRKCF 378
>At2g42170.1 68415.m05219 actin, putative similar to actin 2
[Arabidopsis thaliana] gi|9293903|dbj|BAB01806
Length = 329
Score = 83.8 bits (198), Expect = 6e-17
Identities = 41/75 (54%), Positives = 48/75 (64%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M+ GI +RM KE PERKYSVWIGGSILASLS ++QMW +K
Sbjct: 255 GGTTMFRGIEERMTKEINALAAANMRIKIVAPPERKYSVWIGGSILASLSTYEQMWITKA 314
Query: 335 EYDESGPGIVXRKXF 291
EY+E+GP IV K F
Sbjct: 315 EYEENGPAIVHTKCF 329
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 72.5 bits (170), Expect = 2e-13
Identities = 38/73 (52%), Positives = 43/73 (58%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GGT M GI +RM KE PE + SVWIGGSILASLS F QMW +K+
Sbjct: 292 GGTTMLHGIKERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITKD 351
Query: 335 EYDESGPGIVXRK 297
EY+E G IV RK
Sbjct: 352 EYEEHGAAIVHRK 364
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 63.7 bits (148), Expect = 7e-11
Identities = 33/76 (43%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = -2
Query: 515 GGTXMYPGIADRMQK---EXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWX 345
GGT + +R++K E ER++SVWIGGSILASL FQQMW
Sbjct: 364 GGTSSMQQLKERLEKDLIEESPHSARVKVLASGNTTERRFSVWIGGSILASLGSFQQMWF 423
Query: 344 SKEEYDESGPGIVXRK 297
SK EY+E G + RK
Sbjct: 424 SKSEYEEHGASYIQRK 439
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 63.3 bits (147), Expect = 9e-11
Identities = 33/55 (60%), Positives = 35/55 (63%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQM 351
GGT M+ GIADRM KE PERKYSVWIGGSILASLS FQQ+
Sbjct: 303 GGTTMFSGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQV 357
>At3g60830.1 68416.m06805 actin-related protein 7 (ARP7) identical
to actin-related protein 7 (ARP7) [Arabidopsis thaliana]
GI:21427469; contains Pfam profile PF00022: Actin
Length = 363
Score = 46.8 bits (106), Expect = 9e-06
Identities = 19/39 (48%), Positives = 26/39 (66%)
Frame = -2
Query: 407 YSVWIGGSILASLSXFQQMWXSKEEYDESGPGIVXRKXF 291
YS W+GG+ILA + Q +K +YDE+GP +V RK F
Sbjct: 325 YSAWVGGAILAKVVFPQNQHVTKADYDETGPSVVHRKCF 363
>At3g33520.1 68416.m04291 actin-related protein 6 (ARP6) nearly
identical to actin-related protein 6 (ARP6) [Arabidopsis
thaliana] GI:21427467; contains Pfam profile PF00022:
Actin
Length = 421
Score = 43.6 bits (98), Expect = 8e-05
Identities = 22/75 (29%), Positives = 35/75 (46%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPERKYSVWIGGSILASLSXFQQMWXSKE 336
GG+ ++P + +R++ E + VW GGS+LAS F+ M +K
Sbjct: 346 GGSTLFPQLKERLEGELRPLVPDHFDVKITTQEDPILGVWRGGSLLASSPDFESMCVTKA 405
Query: 335 EYDESGPGIVXRKXF 291
EY+E G R+ F
Sbjct: 406 EYEELGSARCRRRFF 420
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 37.1 bits (82), Expect = 0.007
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 413 RKYSVWIGGSILASLSXFQQMWXSKEEYDESGPGI 309
++++VW GGS+L+S F +KEEY+E G I
Sbjct: 382 QRFAVWFGGSVLSSTPEFFASCRTKEEYEEYGASI 416
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 35.1 bits (77), Expect = 0.028
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Frame = -2
Query: 515 GGTXMYPGIADRMQKEXXXXXXXXXXXXXXXXPE-----------RKYSVWIGGSILAS- 372
GG+ MYPG+ R++KE + RK+ V++GG++LA
Sbjct: 302 GGSTMYPGLPSRLEKEIQDRYLDTVLKGNKDGLKKLRLRIEDPPRRKHMVYLGGAVLAGI 361
Query: 371 LSXFQQMWXSKEEYDESG 318
+ + W ++E+Y E G
Sbjct: 362 MKDAPEFWINREDYMEEG 379
>At3g24210.1 68416.m03038 ankyrin repeat family protein contains
ankyrin repeats, Pfam domain PF00023
Length = 607
Score = 27.5 bits (58), Expect = 5.7
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -1
Query: 480 DAEGDHRPRALDHQDQDHRSPREEVLRMDRWIHPGFPV 367
D E +P+AL H S ++ LR W+ P FP+
Sbjct: 423 DNEHYRKPKALVSDKTRHESEYKKGLRPVLWLSPNFPL 460
>At3g50690.1 68416.m05546 leucine-rich repeat family protein
Length = 447
Score = 26.6 bits (56), Expect = 9.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 486 RQDAEGDHRPRALDHQDQDHRSPREE 409
+ DAEG+ RP + D D++ EE
Sbjct: 153 KTDAEGNERPESDDEDDEEDEEDEEE 178
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,581,753
Number of Sequences: 28952
Number of extensions: 113665
Number of successful extensions: 288
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -