Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32180
         (516 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0160 + 1830671-1830779,1830898-1830971,1831374-1831671,183...    27   8.9  

>04_01_0160 +
           1830671-1830779,1830898-1830971,1831374-1831671,
           1831900-1832867,1833504-1833716,1834034-1834237,
           1835063-1835104
          Length = 635

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 435 EAPGYAPGHERCQQDRTPLHH 497
           E P  +    +C QDR PLHH
Sbjct: 290 EIPSLSNSDYQCYQDRIPLHH 310


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,485,423
Number of Sequences: 37544
Number of extensions: 138811
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)