Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32174
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...   184   9e-48
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    27   1.3  
SPBC216.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   3.8  
SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    26   3.8  
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ...    26   3.8  
SPAC11E3.06 |map1||MADS-box transcription factor Map1|Schizosacc...    25   5.1  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   5.1  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   6.7  
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    25   8.9  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    25   8.9  

>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score =  184 bits (447), Expect = 9e-48
 Identities = 81/129 (62%), Positives = 99/129 (76%)
 Frame = +1

Query: 130 TTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEV 309
           TT +G P+    A   VGK GP LLQD + +D    FDRERIPERVVHAKG+GAFG FE 
Sbjct: 13  TTNTGCPIFNPMAAARVGKGGPVLLQDSHLIDVFQHFDRERIPERVVHAKGSGAFGEFEC 72

Query: 310 THDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVG 489
           T DITKY+   +F  +GK+TP+  RFSTVGGE G+ DT RDPRGFA+KFYTD+G++D+VG
Sbjct: 73  TDDITKYTKHTMFSKVGKKTPMVARFSTVGGERGTPDTARDPRGFALKFYTDEGIFDMVG 132

Query: 490 NNTPIFFIR 516
           NNTP+FF+R
Sbjct: 133 NNTPVFFLR 141


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
           Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1388

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = -3

Query: 448 QQNLEGHEQYQQIHSLHQLLRI*QQSVSFCL-WTQILWQHCTW 323
           ++  E +E+Y+Q+  +         SV + + W Q+L+  CTW
Sbjct: 278 ERKRENYEEYKQVDRIVAKHLNSDGSVEYLVKWKQLLYDFCTW 320


>SPBC216.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +1

Query: 223 DEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAKVFESI 357
           ++++ F  E  P+ V+ A GAG  G  E T  +    A KV++++
Sbjct: 59  NDIAQFLAEIHPDVVIFAAGAGGKGGPERTRAVDYEGAIKVYDAM 103


>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 19/55 (34%), Positives = 26/55 (47%)
 Frame = -2

Query: 389 ENLTAIGVLLPMDSNTLAALYLVMS*VTSKYPKAPAPLACTTRSGIRSLSKDDIS 225
           + +  I  L    SNT A      S V + Y K+P  +A T R  I+S +K  IS
Sbjct: 294 DTVDIIRALKEYASNTSALAEFAKSTVKTLYSKSPTSIAVTNRL-IKSAAKWSIS 347


>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
           subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = -2

Query: 422 VSADPLSPPTVENLTAIGVLLPMDSNTL 339
           VS +P +    +NLTAIGV  P+D+N +
Sbjct: 142 VSINPYNFSAFQNLTAIGV--PLDANNV 167


>SPAC11E3.06 |map1||MADS-box transcription factor
           Map1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 15/63 (23%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +1

Query: 76  TDQLINYKKTLKDSPGFIT-TKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRER 252
           TDQ  +     K S   ++ ++SG P+  +  ++   +NGP+ ++++NF  ++ +F +  
Sbjct: 101 TDQNESQASQAKQSSAQLSDSESGYPLDHEE-MRISEENGPSHIENLNFFSDIDNFSKTS 159

Query: 253 IPE 261
             E
Sbjct: 160 AEE 162


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -2

Query: 191 PFLPTVCIAVLIPTGAPDLVVMKPGESFKVFL*LMSWSVAGSLEAILYVPFLLCGV 24
           P + T  ++ L+P  +  L V+ P     +   +        LE I Y+PFLL G+
Sbjct: 195 PRMHTFSLSELVPLLSERLYVINPNTRMFLVSWIRLLDSIPDLEFISYLPFLLDGL 250


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
            Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = +1

Query: 346  FESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDLVGNNT 498
            F S+  +    + FS  G E      +R    F++K    DGVW+L  N T
Sbjct: 1199 FPSVYSKDNPNLLFSMTGFEVRILPKIRQNEEFSLK----DGVWNLTDNRT 1245


>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +1

Query: 202 LQDVNFLDEMSSFDRERIPERVVHAKGAGA 291
           +  V+  + + ++++E+  E + H K AGA
Sbjct: 270 ITSVSEFEALQAYEKEKFQEMIKHVKDAGA 299


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 436 RGFAVKFYTDDGVWDLVGNNTPI 504
           +G+ V + T+  VWDLV  N  +
Sbjct: 65  KGYLVHWSTETAVWDLVMRNVGV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,234,824
Number of Sequences: 5004
Number of extensions: 44793
Number of successful extensions: 137
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)