Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32174
(516 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9) 30 0.98
SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25) 28 4.0
SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11) 28 4.0
SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05) 28 5.3
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.9
SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11) 27 9.2
SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_48124| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 30.7 bits (66), Expect = 0.74
Identities = 30/85 (35%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Frame = -2
Query: 407 LSPPTVENLTAIGVLLPMDSNTLAAL------YLVMS*VTSKYPKAPAPLACTTRSGIRS 246
LSP TV NLT V P+ +N LA + Y+V SK + C T +
Sbjct: 154 LSPLTV-NLTGSCVSGPIRTNDLALITCPSEKYIVKQSALSKCFQNDKAFLCPTNILHKI 212
Query: 245 LSKDDISSRKLTSCNKAGPFLPTVC 171
S D + KLT A FLPT C
Sbjct: 213 GSFDWLGHTKLTKLKYARNFLPTSC 237
>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
Length = 364
Score = 30.3 bits (65), Expect = 0.98
Identities = 15/60 (25%), Positives = 28/60 (46%)
Frame = +1
Query: 163 TAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAKGAGAFGYFEVTHDITKYSAAK 342
T + T ++GP + + S R+R+ E + G G + Y +IT+YS ++
Sbjct: 177 TQVSTTRRSGPDGKTTTTTREVVDSGGRQRVTESTRTSPGIGRYDYTSARRNITEYSPSQ 236
>SB_20470| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 401
Score = 29.5 bits (63), Expect = 1.7
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 6/86 (6%)
Frame = +1
Query: 178 VGKNGPALLQDVNFLDEMSSFDRERIPERVVH------AKGAGAFGYFEVTHDITKYSAA 339
+ N LLQ + F +M F ++ R +H +KG YF DI + +
Sbjct: 258 ITSNAMGLLQSLTFFTQMRFFCHKQAVGRTLHILTTPDSKGKAVVDYFSAKTDILPSACS 317
Query: 340 KVFESIGKRTPIAVRFSTVGGESGSA 417
E G + R G +S A
Sbjct: 318 SFTEGAGNNALLTGRCHRWGRDSSGA 343
>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2190
Score = 28.3 bits (60), Expect = 4.0
Identities = 17/40 (42%), Positives = 21/40 (52%)
Frame = -2
Query: 476 HTPSSV*NFTAKPRGSRTVSADPLSPPTVENLTAIGVLLP 357
+TPS TA PR SR + S PT + LTA +LP
Sbjct: 2119 YTPSCPDTLTATPRVSRHANRYAPSVPTHDTLTATPRVLP 2158
>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
Length = 1088
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 370 PIAVRFSTVGGESGSADTVRDPRGFAVKFYTDDGVWDL 483
P+AV+ T+ + G ++ G V Y D+G W+L
Sbjct: 127 PLAVKLGTITPDGGGNSYLQCDTGLWVVAYGDEGQWNL 164
>SB_5182| Best HMM Match : TSP_1 (HMM E-Value=1.1e-11)
Length = 1417
Score = 28.3 bits (60), Expect = 4.0
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Frame = +1
Query: 43 GTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNG-PALLQD--- 210
G Y +A++DPAT L Y + + + A K TV G P+L++D
Sbjct: 1076 GVYMIATKDPAT-YLPVYCDVTSEPGAYTLLVTSANGNWKPQEVTVRNQGSPSLIRDYSI 1134
Query: 211 VNFLDEMSSFDRERIPERVVHAKGAGAFG 297
+++ D++ S + + + A+ GA+G
Sbjct: 1135 LDYADDIKSASHAKTLKYKLEARERGAWG 1163
>SB_56547| Best HMM Match : 7tm_1 (HMM E-Value=2.1e-05)
Length = 261
Score = 27.9 bits (59), Expect = 5.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -2
Query: 122 PGESFKVFL*LMSWSVAGSLEAILYVP 42
P +SF L +M+W V GSL IL +P
Sbjct: 129 PSQSFSNKLVIMAWVVGGSLGIILTLP 155
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 27.5 bits (58), Expect = 6.9
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +1
Query: 67 DPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKN 189
+PA +NY TL S + T++ V ++ A + K+
Sbjct: 416 EPAASDFVNYFSTLNKSHTMLATRASDKVSVRLATRAYSKH 456
>SB_59006| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1211
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/53 (32%), Positives = 24/53 (45%)
Frame = +1
Query: 34 SKKGTYKMASRDPATDQLINYKKTLKDSPGFITTKSGAPVGIKTAIQTVGKNG 192
S + T + + P TD I K T KD+ ++T G T +T G NG
Sbjct: 1030 SPETTAAVTTASPTTDAPITNKPTTKDAIPDVSTVKPTTDGNSTIGKTSGTNG 1082
>SB_5835| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 27.5 bits (58), Expect = 6.9
Identities = 16/59 (27%), Positives = 28/59 (47%)
Frame = +1
Query: 103 TLKDSPGFITTKSGAPVGIKTAIQTVGKNGPALLQDVNFLDEMSSFDRERIPERVVHAK 279
T KD+ GF A G + +QT+ + G L+D +LD+ ++ + V H +
Sbjct: 251 TAKDNDGFTAFHLAAREGEEEVLQTLLRTG-VTLKDTVYLDDTDNYGNTCLHLAVKHGR 308
>SB_4451| Best HMM Match : Cornifin (HMM E-Value=0.11)
Length = 1384
Score = 27.1 bits (57), Expect = 9.2
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 488 PTKSHTPSSV*NFTAKPRGSRTVSADP 408
PT ++T ++ NFT KP + TV+A P
Sbjct: 209 PTLNYTVAATPNFTVKPTLNYTVAATP 235
>SB_42858| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 27.1 bits (57), Expect = 9.2
Identities = 16/62 (25%), Positives = 26/62 (41%)
Frame = +1
Query: 271 HAKGAGAFGYFEVTHDITKYSAAKVFESIGKRTPIAVRFSTVGGESGSADTVRDPRGFAV 450
H +G Y + D+ +A +V S+GK+ I + S G + R AV
Sbjct: 529 HPYTSGRLKYLLDSGDLVMAAAREVLYSVGKKDSIKLPHSIARRPGGEDSQYSEGRDLAV 588
Query: 451 KF 456
+F
Sbjct: 589 RF 590
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.395
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,582,221
Number of Sequences: 59808
Number of extensions: 336780
Number of successful extensions: 872
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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