Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32165
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    28   0.21 
AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         27   0.50 

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 0.21
 Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 351 HCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNL-RSPSIHRP 479
           H +  H P    P+    +  CP+  RP  H+ NL R  ++H P
Sbjct: 401 HMNYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRHMAMHDP 444


>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 26.6 bits (56), Expect = 0.50
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 351 HCHGLHRPSLHRPSLHGPSLHCPSLHRPSLHRPNLRSP---SIHRPSIYCPGL 500
           H H    P L     H PS+H P+ H P  ++P   +      H P  + PGL
Sbjct: 119 HQHHHQHPHLPHVQQHHPSVHHPA-HHPLHYQPAAAAAMHHHHHHPHHHHPGL 170


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 233,554
Number of Sequences: 2352
Number of extensions: 2486
Number of successful extensions: 6
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)