Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32164
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             153   8e-40
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             27   0.087
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   1.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    24   1.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   10.0 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   10.0 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   10.0 

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  153 bits (372), Expect = 8e-40
 Identities = 71/74 (95%), Positives = 74/74 (100%)
 Frame = -1

Query: 516 CDVDIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 337
           CDVDIRKDLYANTV+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPE+KYSVWIGGS
Sbjct: 60  CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVWIGGS 119

Query: 336 ILASLSTFQQMWIS 295
           ILASLSTFQQMWIS
Sbjct: 120 ILASLSTFQQMWIS 133


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.5 bits (58), Expect = 0.087
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = -3

Query: 490 VRQHRHVRWYHHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRM 350
           +++H H++ +HH    +    +  HRP     Q Q  +  R+E  R+
Sbjct: 138 LQRHHHLQNHHH--HLQSTAVQDHHRPYQQQQQQQQRQQQRQEERRL 182


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 121 DGVRLDVQFSGITRYNVLTVAFRTRTSTTPHSTGVT--RPRCLEALAVDDAGAGLVVFL 291
           D  +LD  F   T+ N + ++ R++ STT    G T  +   + AL +D        FL
Sbjct: 354 DSAKLDKIFDIATKENAMLLSGRSQKSTTGPPPGPTPAQKARMRALNIDRVSRVFFPFL 412


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -1

Query: 507 DIRKDLYANTVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 346
           DI++  Y + V      MYP  +  M+K I+    +  KI I  P E K  +WI
Sbjct: 349 DIKEMEYLDKVFKETLRMYPPASILMRKAISDYTFNDTKITI--PKEMK--IWI 398


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/19 (31%), Positives = 11/19 (57%)
 Frame = -3

Query: 376 SPREEVLRMDRWIHPGFPV 320
           +P  + + +  WIHP  P+
Sbjct: 531 NPLTDTVPIHTWIHPWLPL 549


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = -3

Query: 460 HHVPRYRRQDAEGDHRPRALDHQDQDHRSPREEVLRMDR 344
           HH  R+R+  +E          Q++  R  RE +++ +R
Sbjct: 10  HHDERFRQSRSEDSETGLRSRTQEERLRRRREWMIQQER 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,288
Number of Sequences: 438
Number of extensions: 2497
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)