Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32163
(516 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily ass... 29 2.0
U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily ass... 29 2.0
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 29 2.6
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 29 2.6
Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical pr... 28 3.4
U00031-7|AAK18870.2| 422|Caenorhabditis elegans Hypothetical pr... 27 6.0
Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical p... 27 8.0
Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical pr... 27 8.0
AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exteri... 27 8.0
AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector ... 27 8.0
>U41021-9|AAQ81276.1| 408|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform b protein.
Length = 408
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 511 IGRIGYRAPPRVFFFFFYKN-CN 446
IG G+ APP VF FFF+ CN
Sbjct: 348 IGAFGHEAPPLVFKFFFWLGYCN 370
>U41021-8|AAQ81275.1| 406|Caenorhabditis elegans Temporarily
assigned gene nameprotein 24, isoform a protein.
Length = 406
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
Frame = -3
Query: 511 IGRIGYRAPPRVFFFFFYKN-CN 446
IG G+ APP VF FFF+ CN
Sbjct: 346 IGAFGHEAPPLVFKFFFWLGYCN 368
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 264 SSSTPSRIRCLTNSISCANCTIPKGNTPRT 353
SS T S +NS SC TI G TPRT
Sbjct: 335 SSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 264 SSSTPSRIRCLTNSISCANCTIPKGNTPRT 353
SS T S +NS SC TI G TPRT
Sbjct: 335 SSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +3
Query: 264 SSSTPSRIRCLTNSISCANCTIPKGNTPRT 353
SS T S +NS SC TI G TPRT
Sbjct: 335 SSGTMSTGTMESNSSSCGTTTITPGGTPRT 364
>Z70271-2|CAA94236.2| 1256|Caenorhabditis elegans Hypothetical protein
W08D2.5 protein.
Length = 1256
Score = 28.3 bits (60), Expect = 3.4
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +3
Query: 135 RTHSVLMTRESAQLKETTSRNGSQKACRHRAGSALKSRSI 254
RT S L++ E QL TTS+NG K + SAL R I
Sbjct: 1187 RTESTLLSAEGQQLHMTTSKNG--KGGENPHSSALFERLI 1224
>U00031-7|AAK18870.2| 422|Caenorhabditis elegans Hypothetical
protein B0361.7 protein.
Length = 422
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 167 CTAE--GNDFKKWIPESLQTSCG-KCSEKQKYLV 259
CT + G+D KK+ PE + CG K S + YLV
Sbjct: 342 CTLQKLGDDLKKYFPEDWEAECGLKTSFQFIYLV 375
>Z77666-12|CAJ43911.2| 896|Caenorhabditis elegans Hypothetical
protein K08E7.5c protein.
Length = 896
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQ 247
+ KG G DF K + T C C EKQ
Sbjct: 526 SSKGITAVTGKDFMKKLGRKSPTCCSCCDEKQ 557
>Z77666-9|CAJ43912.1| 541|Caenorhabditis elegans Hypothetical
protein K08E7.5d protein.
Length = 541
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQ 247
+ KG G DF K + T C C EKQ
Sbjct: 171 SSKGITAVTGKDFMKKLGRKSPTCCSCCDEKQ 202
>Z77666-8|CAJ43910.1| 493|Caenorhabditis elegans Hypothetical
protein K08E7.5b protein.
Length = 493
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQ 247
+ KG G DF K + T C C EKQ
Sbjct: 123 SSKGITAVTGKDFMKKLGRKSPTCCSCCDEKQ 154
>Z77666-7|CAB01228.1| 1221|Caenorhabditis elegans Hypothetical
protein K08E7.5a protein.
Length = 1221
Score = 27.1 bits (57), Expect = 8.0
Identities = 12/32 (37%), Positives = 14/32 (43%)
Frame = +2
Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQ 247
+ KG G DF K + T C C EKQ
Sbjct: 851 SSKGITAVTGKDFMKKLGRKSPTCCSCCDEKQ 882
>AF038619-5|AAB92078.6| 1262|Caenorhabditis elegans Gut on exterior
protein 2 protein.
Length = 1262
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 185 DFKKWIPESLQTSCGKCSEKQKYLVAKFVHAIKDKMPDEFDILRKLHDPKGEYTENLDK 361
+ + +I ++ K + +K L+A + ++KD + D + L ++ D KG+ + K
Sbjct: 477 ELQAFIHHTINEPLQKAVKHKKDLLASILQSVKDSISDAGNELNRMTDVKGKKKSSAPK 535
>AB073209-1|BAB70472.1| 1262|Caenorhabditis elegans rac effector
protein.
Length = 1262
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +2
Query: 185 DFKKWIPESLQTSCGKCSEKQKYLVAKFVHAIKDKMPDEFDILRKLHDPKGEYTENLDK 361
+ + +I ++ K + +K L+A + ++KD + D + L ++ D KG+ + K
Sbjct: 477 ELQAFIHHTINEPLQKAVKHKKDLLASILQSVKDSISDAGNELNRMTDVKGKKKSSAPK 535
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,240,582
Number of Sequences: 27780
Number of extensions: 220535
Number of successful extensions: 751
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -