Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32163
         (516 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g18740.1 68418.m02224 expressed protein predicted proteins - ...    29   1.4  
At1g69740.1 68414.m08025 porphobilinogen synthase, putative / de...    28   3.2  
At1g08840.1 68414.m00984 DNA replication helicase, putative simi...    28   3.2  
At2g47820.1 68415.m05968 expressed protein                             27   5.7  
At4g16380.1 68417.m02480 expressed protein                             27   7.5  
At3g59100.1 68416.m06589 glycosyl transferase family 48 protein ...    27   7.5  
At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing pro...    27   7.5  
At3g19270.1 68416.m02444 cytochrome P450 family protein similar ...    27   9.9  
At2g26820.1 68415.m03218 avirulence-responsive family protein / ...    27   9.9  

>At5g18740.1 68418.m02224 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 609

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = +1

Query: 391 DLTHSLHDTVTCDFINKCHYS 453
           +L+++L  +VTC FIN CH+S
Sbjct: 269 ELSNTLCFSVTCRFINTCHFS 289


>At1g69740.1 68414.m08025 porphobilinogen synthase, putative /
           delta-aminolevulinic acid dehydratase, putative similar
           to delta-aminolevulinic acid dehydratase (Alad)
           GI:493019 [SP|P43210] from Glycine max, SP|P24493 from
           Spinacia oleracea, SP|P30124 from Pisum sativum
          Length = 430

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 200 IPESLQTSCGKCSEKQKYLVAKFVHAIKDKMPD 298
           +PE+L+ S G  +     LV + +  +KDK PD
Sbjct: 182 VPEALKNSTGDEAYNDNGLVPRTIRLLKDKYPD 214


>At1g08840.1 68414.m00984 DNA replication helicase, putative similar
           to helicase [Xenopus laevis] gi|18845092|gb|AAL79550
          Length = 1296

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -3

Query: 409 EANELNHNLMSVSFEEFIKVLGVFPFGIVQ-FAQDIEFVRHLILD 278
           E + L+H L  +  +EF+    V  F ++Q F Q+   +R +I+D
Sbjct: 817 EVSNLSHELWRIYKDEFMTSFSVMRFNLMQLFVQNGHNIRKMIVD 861


>At2g47820.1 68415.m05968 expressed protein
          Length = 805

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +3

Query: 153 MTRESAQLKETTSRNGSQKACRHRAGSALKSRSI*WPSSSTPSRI 287
           M+ ES    ETT+++ + + C   + S+ KS S+   ++++PS I
Sbjct: 503 MSEESENKAETTAKSMASRVCGGGSISSGKSSSVNMDNATSPSTI 547


>At4g16380.1 68417.m02480 expressed protein
          Length = 105

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 CGKCSEKQKYLVAKFVHAIKDKMPDE 301
           C KC +K K ++ KF   I+D++ DE
Sbjct: 20  CPKCYKKVKKVLCKFPSEIRDQLFDE 45


>At3g59100.1 68416.m06589 glycosyl transferase family 48 protein
           contains Pfam profile: PF02364 1,3-beta-glucan synthase
          Length = 1934

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 16/76 (21%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +2

Query: 152 NDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQKYLVAKFVHA-IKDKMPDEFDILRKLHD 328
           N+  K   + ND  +W+        G  + ++++++    +A I+ +  +E+D L+    
Sbjct: 235 NEMRKARTKLNDILEWLASEFGFQRGNVANQREHIILLLANADIRKRNDEEYDELK---- 290

Query: 329 PKGEYTENLDKFLETY 376
                TE +DK  ++Y
Sbjct: 291 -PSTVTELMDKTFKSY 305


>At2g32415.1 68415.m03961 3'-5' exonuclease domain-containing
           protein similar to SP|Q12149 Exosome complex exonuclease
           RRP6 (EC 3.1.13.-) (Ribosomal RNA processing protein 6)
           {Saccharomyces cerevisiae}
          Length = 880

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 74  DKKYDNFNVDEIID-NPRLLKAYTFCFNDKGKCTAEGNDFKKWIPESLQTSCGKCSEKQK 250
           D +Y N  + ++++ NP    A    F  KG+   EGNDF      ++   CG+     +
Sbjct: 526 DGRYLNRGLAKLVEENP---PAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLR 582

Query: 251 YLV 259
           Y +
Sbjct: 583 YRI 585


>At3g19270.1 68416.m02444 cytochrome P450 family protein similar to
           Cytochrome P450 85 (SP:Q43147) {Lycopersicon
           esculentum};
          Length = 468

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 443 VITVFVKKKKKNSRGGPVPNS 505
           ++ V V KKKKNSRG   P S
Sbjct: 18  LVRVIVSKKKKNSRGKLPPGS 38


>At2g26820.1 68415.m03218 avirulence-responsive family protein /
           avirulence induced gene (AIG1) family protein similar to
           SP|P54120 AIG1 protein {Arabidopsis thaliana}; contains
           Pfam profile PF04548: AIG1 family
          Length = 463

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 430 SHR*QYHEANELNHNLMSVSFEEFIKVLGVFPFGI 326
           SH  ++ +   L+HN+ S +F E  ++LGV+ F +
Sbjct: 319 SHSEEHWKWVNLDHNISSNTFVEVAELLGVYWFDV 353


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,510,247
Number of Sequences: 28952
Number of extensions: 201292
Number of successful extensions: 618
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 618
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)