Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32162
         (411 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   2.7  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    22   2.7  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    20   8.2  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          20   8.2  

>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 249 VPVAELEQVQPTEXPTVVXSETLAKP 326
           VP   + ++ P E PT   S  L  P
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESP 231


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = +3

Query: 249 VPVAELEQVQPTEXPTVVXSETLAKP 326
           VP   + ++ P E PT   S  L  P
Sbjct: 206 VPKPTVPKIPPAEFPTTSSSSALESP 231


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 221 SFTCNS*YSFTCNYR*RFTCRYRSSFNYI 135
           ++  N  YS   NY+  F+C+Y    N +
Sbjct: 214 NYQYNQAYSNYNNYQEGFSCQYYQGKNCV 242


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -2

Query: 221 SFTCNS*YSFTCNYR*RFTCRYRSSFNYI 135
           ++  N  YS   NY+  F+C+Y    N +
Sbjct: 234 NYQYNQAYSNYNNYQEGFSCQYYQGKNCV 262


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,704
Number of Sequences: 336
Number of extensions: 1300
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8963165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)