Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32162
(411 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.030
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.092
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 27 0.86
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 1.1
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 26 2.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 2.6
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 26 2.6
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 26 2.6
SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces p... 26 2.6
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 25 4.6
SPAC4G8.11c |atp10||F1-F0 ATPase assembly protein|Schizosaccharo... 25 4.6
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 6.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 25 6.1
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.030
Identities = 30/110 (27%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Frame = +3
Query: 54 VPLDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDV 233
VP + PV + AP VP AA +PA +P V +V A S
Sbjct: 1123 VPKPSVAAPPVPVPSGAPPVPKPSVAAP-----PVPAPSGAPPVPKPSVAAPPVPAPSSG 1177
Query: 234 PLEIPVPVAELEQV-QPTEXPTVVXSETLAKPAEEPSIPLVAEEPASVIP 380
+P P A + V P+E P V P PS P++ +P
Sbjct: 1178 IPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLP 1227
Score = 27.9 bits (59), Expect = 0.65
Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%)
Frame = +3
Query: 57 PLDVAESAPVALDEVAPEVPSEIKAADV--IETASIPASESSP---IVASETVLGITSEA 221
P+ + +AP+A P++ S+ + + IP ++P I S + +S
Sbjct: 999 PVSTSPAAPLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSG 1058
Query: 222 LSDVPLEIPVPVAELEQVQPTEXPTVVXSETLAKPAEEPSI--PLVAEEPASVIP 380
P +P P +E+ + V + + P +PS+ P V + +V P
Sbjct: 1059 APSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPP 1113
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 30.7 bits (66), Expect = 0.092
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 5/105 (4%)
Frame = +3
Query: 81 PVALDEVAPEVPS--EIKAADVI-ETASIPASESSPIVASETVLGITSEALSDVPLEIPV 251
PVA VAPEVPS + A V+ E S+P ++P+V + VP V
Sbjct: 608 PVA--PVAPEVPSVPQRPAVPVVPEAPSVPQPPAAPVVPE----------VPSVPQRPAV 655
Query: 252 PVA-ELEQV-QPTEXPTVVXSETLAKPAEEPSIPLVAEEPASVIP 380
PV E V QP P V ++ +P P +P + V+P
Sbjct: 656 PVVPEAPSVPQPPAAPVVPEVPSVPQPPAVPVVPEAGQLNEPVVP 700
Score = 26.6 bits (56), Expect = 1.5
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
Frame = +3
Query: 42 AGETVPLDVAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIV--ASETVLGITS 215
+GE++ L+ + P E S+ A + T S+P ++P+V A +
Sbjct: 476 SGESLSLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAA 535
Query: 216 EALSDVPLEIPVPVAELEQVQPT--EXPTV-VXSETLAKPAEEPSIPLVAEEPA 368
+VP P A + P+ + P V V E L+ P + P P+ E P+
Sbjct: 536 PVAPEVPSAPQRPAAPVVPEAPSVPQRPAVPVVPEALSVP-QPPVAPVAPEVPS 588
Score = 24.6 bits (51), Expect = 6.1
Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 1/83 (1%)
Frame = +3
Query: 102 APEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEIP-VPVAELEQVQ 278
AP VP A V E S+P + P+V + + V E+P VP Q
Sbjct: 631 APSVPQPPAAPVVPEVPSVPQRPAVPVVPEAP--SVPQPPAAPVVPEVPSVP-------Q 681
Query: 279 PTEXPTVVXSETLAKPAEEPSIP 347
P P V + L +P P P
Sbjct: 682 PPAVPVVPEAGQLNEPVVPPLPP 704
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.5 bits (58), Expect = 0.86
Identities = 11/36 (30%), Positives = 23/36 (63%)
Frame = +3
Query: 84 VALDEVAPEVPSEIKAADVIETASIPASESSPIVAS 191
VA+D+ A PS++ +D +T+ + + S+P +A+
Sbjct: 630 VAVDQPAISTPSDVVGSDAGDTSKVSSGTSTPRMAA 665
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.1 bits (57), Expect = 1.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = +3
Query: 234 PLEIPVPVAELEQVQPTEXPTVVXSETLAKPAEEPSIPLVAEEPASVIPXSVEALA 401
P P P A + Q+ P V S + + PS A P+S +P S + A
Sbjct: 1472 PSSAPAPPAPVSQLPPAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFA 1527
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.2 bits (55), Expect = 2.0
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = +3
Query: 60 LDVAESAPVALDEVAPEVPSEI 125
+DV ++A +AL ++A E+P+E+
Sbjct: 397 MDVRQAALLALSQIAVEIPTEV 418
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 2.6
Identities = 18/53 (33%), Positives = 29/53 (54%)
Frame = -3
Query: 220 ASLVIPNTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSATS 62
+S + ++++ ++ SLA S TSA S TS + SS A ++SATS
Sbjct: 141 SSSITSSSLASSSTTSSSLASSSTNSTTSATPTSSATSSSLSSTA-ASNSATS 192
Score = 25.0 bits (52), Expect = 4.6
Identities = 19/57 (33%), Positives = 27/57 (47%)
Frame = -3
Query: 232 TSDKASLVIPNTVSLATIGEDSLAGIEAVSITSAALISLGTSGATSSKATGADSATS 62
++ +SL + S + SLA S TSA+ S S TSS AT + A+S
Sbjct: 69 SASSSSLTSSSAASSSLTSSSSLASSSTNSTTSASPTS---SSLTSSSATSSSLASS 122
Score = 24.2 bits (50), Expect = 8.0
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 232 TSDKASLVIPNTVSLATIGEDSLAGIEAVSITSAALISLG-TSGATSSKATGADSATS 62
TS S + +T + + SLA S TSA S +S A S+ AT + A+S
Sbjct: 173 TSSATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASS 230
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.8 bits (54), Expect = 2.6
Identities = 23/87 (26%), Positives = 36/87 (41%)
Frame = +3
Query: 66 VAESAPVALDEVAPEVPSEIKAADVIETASIPASESSPIVASETVLGITSEALSDVPLEI 245
+A + PV++D A S + S A+ +S V ++ + EAL+ +
Sbjct: 151 MASTEPVSVDSAAAPSQSTNPEGNGGSVGSQAAAPTSRPVENDAASIL--EALAAFAQKA 208
Query: 246 PVPVAELEQVQPTEXPTVVXSETLAKP 326
PVP A E V P V S + P
Sbjct: 209 PVPSAAEESVSTPPQPAVAPSVSAVVP 235
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.8 bits (54), Expect = 2.6
Identities = 20/73 (27%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Frame = +3
Query: 192 ETVLGITSEALSDVPLEIPVPVAELEQ---VQPTEX--------PTVVXSETLAKPAEEP 338
+ + I + + P IP VA L+ QP+E ++ S T KP +P
Sbjct: 129 QPMASIWENIVPEKPAIIPPEVASLQDRLGAQPSEKVFSLQELEEQLLNSMTAPKPPSQP 188
Query: 339 SIPLVAEEPASVI 377
+IP+V E A+ +
Sbjct: 189 AIPIVPSEMAAQV 201
>SPAC1002.13c |psu1||beta-glucosidase Psu1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 417
Score = 25.8 bits (54), Expect = 2.6
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 8/98 (8%)
Frame = +3
Query: 51 TVPLDVAESAPVALDEVAPEVPSEIKAADVIET--ASIPASESSPIVASETVLGITSEAL 224
TV L+ A SA ++ + A E + A+ + AS+ + SS + AS T + +S A
Sbjct: 45 TVTLEAAASA-ISTNGAAKEAATAAGDAETTSSVAASVTPAASSSVAASVTPVASSSVAA 103
Query: 225 SDVPLEIPVPV------AELEQVQPTEXPTVVXSETLA 320
S P+ V A V PT V S +A
Sbjct: 104 SVTPVSSSAVVDSATSAAASSSVIPTSSSVVASSSEVA 141
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 108 EVPSEIKAADVIETASIPASESSPIV 185
E P+E+ A + E+ + P S SSP V
Sbjct: 389 EAPAEVGAISLTESFNSPVSNSSPNV 414
>SPAC4G8.11c |atp10||F1-F0 ATPase assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.0 bits (52), Expect = 4.6
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +3
Query: 63 DVAESAPVALDEVA----PEVPSEIKAADVIETASIPASESSP 179
D E AP AL V P + SE++ + E + PAS SSP
Sbjct: 32 DTKEKAPSALIPVGLLVKPTMLSEVQKPTLWEKLTKPASTSSP 74
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 24.6 bits (51), Expect = 6.1
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +3
Query: 60 LDVAESAPVALDEVAPEVPSE--IKAADVIETASIPASESSPIVASETVLGITSEALSDV 233
+DV ES A D++ VPSE I+ ++IE P I S + S + +
Sbjct: 605 IDVNESLARAFDQLVGIVPSEPTIQVPNLIEKGKAPLLSMFEIPRSPSRFKARSPSKAAR 664
Query: 234 PLEIPVP--VAELEQVQPTEXPTVVXSETLAKPAEEPSI 344
L+ P+ V E + P V +KP E S+
Sbjct: 665 VLKKPLKKRVRFSEVPTTSSVPPVEIKNKDSKPKVEKSL 703
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 24.6 bits (51), Expect = 6.1
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +3
Query: 153 SIPASESSPIVASETVLGITSEALSDVPLEIPVPVAELEQVQPTE 287
+IP ++S I+ +++ ITS+ + L++ +P E Q P E
Sbjct: 644 NIPITDSHKILFKKSIEVITSKIRRLLKLDVYLPTVESLQKLPAE 688
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,174,743
Number of Sequences: 5004
Number of extensions: 20850
Number of successful extensions: 92
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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