Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32161
         (385 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   4.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   6.5  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   6.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           20   8.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    20   8.6  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 20/73 (27%), Positives = 27/73 (36%)
 Frame = -3

Query: 296 IVLTCLDQCLRPFAIFEVRAPPMAVPIPPNEVAMPSRPFSILSSSIPWSAKLEISFTCPA 117
           + +  ++ CL    + +   PP   P PP             SSS P SAKL+  F    
Sbjct: 318 VFMALMEYCLVNIVLGDSDTPPKPAPPPPPP-----------SSSGPDSAKLDKIFDIAT 366

Query: 116 LSLPKLSSAESPK 78
                L S  S K
Sbjct: 367 KENAMLLSGRSQK 379


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 144 TGNILYVSGIVFAKTVERGVTKATE 70
           TG+++Y  G +  +T+E+   +A E
Sbjct: 24  TGHLIYKCGGIDKRTIEKFEKEAQE 48


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 144 TGNILYVSGIVFAKTVERGVTKATE 70
           TG+++Y  G +  +T+E+   +A E
Sbjct: 24  TGHLIYKCGGIDKRTIEKFEKEAQE 48


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 113 SLPKLSSAESPKLPNPESW 57
           ++PK S  +SPKL    +W
Sbjct: 216 TVPKHSKTKSPKLRPYPNW 234


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.2 bits (40), Expect = 8.6
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -3

Query: 83  PKLPNPESWCPNPESWCPNPESWCPN 6
           P LP P S    P+S+   P    P+
Sbjct: 652 PLLPRPISCHTTPDSFIEAPNKTLPS 677


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,917
Number of Sequences: 438
Number of extensions: 2086
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)