Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32159
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 30 1.3
12_01_0462 - 3629190-3629425,3629765-3630122,3630573-3630796,363... 29 2.2
11_01_0247 - 1892248-1892602,1892835-1893112,1893371-1893392,189... 29 2.2
02_04_0224 - 21059328-21059888,21060388-21060462,21060715-210607... 29 2.2
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137 29 2.9
01_06_1031 - 33945681-33945822,33946502-33946641,33946748-339469... 28 5.1
10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708 27 6.8
07_03_1774 + 29425486-29425831,29426018-29426235,29426337-294271... 27 6.8
06_01_0125 + 970746-970967,971126-971226,971897-972026,972108-97... 27 6.8
05_01_0061 - 422914-423027,423114-423149,423250-423324,423412-42... 27 6.8
01_07_0338 - 42840890-42841006,42841101-42841136,42841226-428413... 27 6.8
01_03_0194 + 13645418-13645790,13645879-13647653 27 6.8
04_04_0740 - 27699609-27699761,27699864-27700004,27700094-277001... 27 8.9
04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420 27 8.9
03_05_0258 - 22442527-22443927 27 8.9
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 29.9 bits (64), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +3
Query: 165 GTIYSSVGRSSLCIVEWFNNELQV 236
G +YSSVG+ S+ + W + +LQ+
Sbjct: 407 GFVYSSVGKDSILVTAWGSGQLQI 430
>12_01_0462 -
3629190-3629425,3629765-3630122,3630573-3630796,
3631375-3631552
Length = 331
Score = 29.1 bits (62), Expect = 2.2
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +1
Query: 157 KEKELYTPPLDEVACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLK-SPGLTGDAKLVEI 333
+E+E TP + + C N T KF + S + D PPYYL S K++EI
Sbjct: 33 EEEEDCTPLPNGLICSRQNWETMYGKFADASPMRNTDRPVPPYYLPISMMQFFSVKVIEI 92
Query: 334 GG 339
G
Sbjct: 93 MG 94
>11_01_0247 -
1892248-1892602,1892835-1893112,1893371-1893392,
1894613-1895268
Length = 436
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -3
Query: 214 HSTIHKLLRPTEEYIVPSPXXXXXXXXLTSFLQSRSPKLPSVPTPR 77
+ST+H R T+E + SP F R P L S+P+PR
Sbjct: 95 YSTLH---RGTDELVAHSPHQLVPFLESQVFANDRIPDLSSLPSPR 137
>02_04_0224 -
21059328-21059888,21060388-21060462,21060715-21060798,
21060866-21061183,21061511-21061722,21061766-21062030
Length = 504
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 268 LTEPPYYLKSPGL-TGDAKLVEIGGPPYLVPQVKRD 372
+ +PPY +++ G +G KL++ PY VP KRD
Sbjct: 324 ICDPPYGVRAGGRKSGGRKLIKGTVAPYTVPDEKRD 359
>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
Length = 542
Score = 28.7 bits (61), Expect = 2.9
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -2
Query: 359 CGTKYGGPPISTSLASPVNPGD 294
C ++GGPP +S+A PV G+
Sbjct: 200 CQVRWGGPPSKSSIADPVLTGE 221
>01_06_1031 -
33945681-33945822,33946502-33946641,33946748-33946995,
33947355-33947576,33948188-33948839
Length = 467
Score = 27.9 bits (59), Expect = 5.1
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 370 DKIYDLAKLLEHLNRDPAFLAGAGAGPW 453
+K+ +L +LL + DP + G GAG W
Sbjct: 24 EKLDELRRLLGKADGDPLRIVGVGAGAW 51
>10_08_0337 + 16900778-16900910,16902205-16902299,16904233-16905708
Length = 567
Score = 27.5 bits (58), Expect = 6.8
Identities = 21/60 (35%), Positives = 27/60 (45%)
Frame = -2
Query: 503 LRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTKYGGPPIST 324
L TL ++PS P+ G G A + S + YIL+ T GTK P IST
Sbjct: 80 LLTLAVSVPSLKPPKCGAGTADPGCSEKASSLQLGVFFLALYILAVGTGGTK---PNIST 136
>07_03_1774 +
29425486-29425831,29426018-29426235,29426337-29427131,
29427206-29428074,29428317-29428749,29429263-29429859
Length = 1085
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 506 PLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSL 390
P+ L F +F YG PAP + A S KC++ +
Sbjct: 359 PVLHLAFQALDKFKKEYGRYPAPGCEQDAQSFLKCAADI 397
>06_01_0125 +
970746-970967,971126-971226,971897-972026,972108-972333,
972400-972502,972519-972594,972710-973333
Length = 493
Score = 27.5 bits (58), Expect = 6.8
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +1
Query: 175 TPPLDEVAC--VLSNGLTTNFKFVEVSVADSPDLTEPP 282
T P + C +L N N KF+E++ + SPD EPP
Sbjct: 297 TEPFTFMHCWKLLHNEAKWNNKFLELNNSTSPDRMEPP 334
>05_01_0061 -
422914-423027,423114-423149,423250-423324,423412-423465,
423554-423620,423912-424025,424114-424215,424220-424269,
424380-424424,424559-424642,424996-425100,425300-425443,
425535-425643,425738-425766
Length = 375
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 425 SSPALEPDRGRTW 463
S P LEPDRG TW
Sbjct: 236 SQPGLEPDRGLTW 248
>01_07_0338 -
42840890-42841006,42841101-42841136,42841226-42841300,
42841380-42841433,42841703-42841769,42841844-42841900,
42842163-42842276,42842354-42842455,42842538-42842653,
42842892-42842975,42843429-42843533,42843732-42843875,
42843961-42844069,42844149-42844177
Length = 402
Score = 27.5 bits (58), Expect = 6.8
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = +2
Query: 425 SSPALEPDRGRTW 463
S P LEPDRG TW
Sbjct: 243 SQPGLEPDRGLTW 255
>01_03_0194 + 13645418-13645790,13645879-13647653
Length = 715
Score = 27.5 bits (58), Expect = 6.8
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = +1
Query: 346 YLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNG 507
Y+V V RDK Y+L LE ++ + AF A P +G+N I+ +V NG
Sbjct: 71 YVVSYVGRDKYYNLFHGLECVD-NRAFCLLLWAALLPMVGMNTSSILT-AVHNG 122
>04_04_0740 -
27699609-27699761,27699864-27700004,27700094-27700171,
27700298-27700399,27700492-27700548,27700690-27700788,
27700896-27700967,27701062-27701202,27701281-27701413,
27701623-27701690,27701770-27701775
Length = 349
Score = 27.1 bits (57), Expect = 8.9
Identities = 16/56 (28%), Positives = 24/56 (42%)
Frame = +1
Query: 235 FVEVSVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIYDLAKLLE 402
F++ SP + +P S + K V P +V RDK++D KL E
Sbjct: 94 FLDYDGTLSPIVNDPEKAFMSSEMRATVKSVAKHFPTAIVSGRSRDKVFDFVKLTE 149
>04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420
Length = 222
Score = 27.1 bits (57), Expect = 8.9
Identities = 20/52 (38%), Positives = 24/52 (46%)
Frame = +3
Query: 147 SNNQGEGTIYSSVGRSSLCIVEWFNNELQVCGSVSGR*SRPH*TSLLSQITR 302
SN G G I + G C VE ++ L CG SG SR H L + TR
Sbjct: 173 SNCGGRG-IVGACGLHEQCTVEMYDGLLVECGDQSG--SRMHDGGLRKEDTR 221
>03_05_0258 - 22442527-22443927
Length = 466
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = +1
Query: 256 DSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKI 378
D+ D E P GL GD +V I P QV+RD +
Sbjct: 323 DTGDTRETPAIDVCKGLVGDKAVVSIYDPQVTEEQVQRDLV 363
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,618,736
Number of Sequences: 37544
Number of extensions: 320500
Number of successful extensions: 1096
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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