Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV32159
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)                     56   1e-08
SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)                 29   3.0  
SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)                 28   4.0  
SB_42811| Best HMM Match : SRCR (HMM E-Value=0)                        28   5.3  
SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036)                 28   5.3  
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)             27   6.9  
SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)                    27   6.9  
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)          27   9.2  
SB_45100| Best HMM Match : RVT_1 (HMM E-Value=0.022)                   27   9.2  
SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)                  27   9.2  

>SB_20441| Best HMM Match : DUF1394 (HMM E-Value=0)
          Length = 522

 Score = 56.4 bits (130), Expect = 1e-08
 Identities = 33/99 (33%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
 Frame = +1

Query: 196 ACVLSNGLTTNFKFVEVSVADSPDLTEPPYYLKSPGLT-----GDAKLVEIGGPPYLVPQ 360
           A  +S+  T+N K +     +  DL  PP    + GL      G  ++V++GGP YL+P 
Sbjct: 256 AASMSSRSTSNEKELSKFPVEDVDLYVPPLDELAKGLILLGFGGKPRIVDVGGPAYLLPL 315

Query: 361 VKRDKIYDLAKLLEHLNRDPAFLAGAGAGPWPYLGVNCE 477
            + +KIYD+  +    +    ++ GAGAG    +GVNCE
Sbjct: 316 PQLNKIYDMNDVAAKADLPGGYVIGAGAGSHTSVGVNCE 354


>SB_4930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 1127

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 349 LVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPW 453
           +VP VK++ +   A+++++LNR P F     A PW
Sbjct: 359 VVPHVKKEDLEYFAEVIDNLNRTPKF----RASPW 389


>SB_36160| Best HMM Match : TFIIF_alpha (HMM E-Value=0)
          Length = 603

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 506 PLRTLRFTIPSQFTPRYGHGPAPAPARKAGSRFKCSSSLARSYILSRLTCGTK 348
           P   ++F  PS    +    P+P    +A  R  CS +LA+ Y + R   G+K
Sbjct: 19  PETFVKFRNPSPQAFQVSLRPSPILFFRAFFRITCSKNLAKKYSMMRFQSGSK 71


>SB_42811| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 854

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +2

Query: 410 TATPPSSPALEPDRGRTW 463
           TATPP  P+ +  RGR W
Sbjct: 298 TATPPDVPSSDSGRGRVW 315


>SB_50283| Best HMM Match : F-box (HMM E-Value=0.00036)
          Length = 609

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/56 (26%), Positives = 29/56 (51%)
 Frame = -2

Query: 251 TDTSTNLKFVVKPFDNTQATSSNGGVYSSFSLIVTLV*SIDVILAVEVTKVAICTD 84
           ++TS   +  +KPF N + TS+ G +  S    V L+ +   +  +E+  +  CT+
Sbjct: 242 SETSAAAEAALKPFQNIEETSALGQISPSSVDAVRLMKASTKLRDIELKDIERCTE 297


>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
          Length = 1382

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/28 (57%), Positives = 17/28 (60%)
 Frame = -3

Query: 130 TSFLQSRSPKLPSVPTPRNQTLTIN*VT 47
           TSF  S    LPS PTPRN  + IN VT
Sbjct: 723 TSFESSMHKVLPSPPTPRN-IMPINLVT 749


>SB_13710| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +1

Query: 28  IKTSDKMSLSLLLVFGYAASVQMATLVTSTARMTSIDYTKVTI--KEKELYTPPLDEVAC 201
           +K+S  M +  + +  Y  ++ + T     A  T+  + ++    KEK+LY P +D  AC
Sbjct: 182 MKSSVPMRVFEMFLLRYEPAIAVPTYFNKNAEWTNGKHDRICGRGKEKKLYYPAVDYDAC 241

Query: 202 VLS 210
            ++
Sbjct: 242 FVA 244


>SB_56770| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 1136

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 106  VTSTARMTSIDYTKVTIKEKELYTPPLD-EVACVLS--NGLTTNFKFVEVSVA 255
            +TST  + + +  K+T+K  +  +PP++ +V+  +S    +TT  KF E + A
Sbjct: 936  ITSTNLLAANNEYKLTVKATDTGSPPMESQVSVTVSVITPITTPVKFAEANYA 988


>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3610

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
 Frame = +1

Query: 106 VTSTARMTSIDYTKVTIKEKELYTPPLD-EVACVLS--NGLTTNFKFVEVSVA 255
           +TST  + + +  K+T+K  +  +PP++ +V+  +S    +TT  KF E + A
Sbjct: 167 ITSTNLLAANNEYKLTVKATDTGSPPMESQVSVTVSVITPITTPVKFAEANYA 219


>SB_42711| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 920

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = +1

Query: 334 GGPPYLVPQVKRDKIYD 384
           G PPY  P+V   KIYD
Sbjct: 315 GSPPYAAPEVFEGKIYD 331


>SB_16205| Best HMM Match : Neur_chan_memb (HMM E-Value=1e-12)
          Length = 1286

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 325 VEIGGPPYLVPQVKR 369
           +++GGP YLVP +KR
Sbjct: 647 IKLGGPTYLVPVIKR 661


>SB_45100| Best HMM Match : RVT_1 (HMM E-Value=0.022)
          Length = 248

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 184 LDEVACVLSNGLTTNFKFVEVSVA-DSPDLTEPPYYLKSPGLTGDAKLVE 330
           L  +  +L NG  T+F ++++S A D  DL +  +  K      D KLV+
Sbjct: 36  LHHIGSLLDNGKQTDFIYMDMSKAFDKVDLPDVVHNSKVACFADDTKLVK 85


>SB_2672| Best HMM Match : GSHPx (HMM E-Value=4.1e-14)
          Length = 444

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 280 PYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAG 435
           P   K PGL   A+ +   G  +   Q  +   YD+  +L+H++ + AFL G
Sbjct: 253 PPSTKQPGL---AQSLLYSGSRFQGHQKSKGNRYDVEVVLQHVDEESAFLCG 301


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,656
Number of Sequences: 59808
Number of extensions: 341212
Number of successful extensions: 822
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)