Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV32159
(516 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase, puta... 29 1.9
At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3) ... 28 3.2
At3g19020.1 68416.m02415 leucine-rich repeat family protein / ex... 28 3.2
At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein] reduct... 28 3.2
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 28 4.3
At5g10600.1 68418.m01227 cytochrome P450 family protein similar ... 27 5.7
At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate dehy... 27 7.5
At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate dehy... 27 7.5
At4g09810.1 68417.m01610 transporter-related low similarity to U... 27 9.9
At3g23685.1 68416.m02978 F-box family protein contains TIGR01640... 27 9.9
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 9.9
>At3g24220.1 68416.m03039 9-cis-epoxycarotenoid dioxygenase,
putative / neoxanthin cleavage enzyme, putative /
carotenoid cleavage dioxygenase, putative similar to
GB:CAB10168 from [Lycopersicon esculentum] (J. Exp. Bot.
47, 2111-2112 (1997)); similar to 9-cis-epoxycarotenoid
dioxygenase [Phaseolus vulgaris][GI:6715257]
Length = 577
Score = 29.1 bits (62), Expect = 1.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 403 HLNRDPAFLAGAGAGPWPYLGVNCEGIVNLSVRNGTV 513
++ R F+ A A PWP C GI + ++NGTV
Sbjct: 463 YVGRKSQFVYIAIADPWP----KCSGIAKVDIQNGTV 495
>At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3)
identical to atran3 [Arabidopsis thaliana] GI:2058280
Length = 221
Score = 28.3 bits (60), Expect = 3.2
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +1
Query: 226 NFKFVEVSVADSPDLTEPPYYLKSPGLTGDAKLVEIGGPPYLVPQVKRDKIYDLAKLLEH 405
N ++ E+S + + +P YL L GDA L + P P+V+ DLA +H
Sbjct: 146 NLQYYEISAKSNYNFEKPFLYLARK-LAGDANLHFVESPALAPPEVQ----IDLAAQQQH 200
Query: 406 LNRDPAFLAGAGAGPWP 456
A LA A + P P
Sbjct: 201 ----EAELAAAASQPLP 213
>At3g19020.1 68416.m02415 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 956
Score = 28.3 bits (60), Expect = 3.2
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 126 DVNRLH*SNNQGEGTIYSSVGRSSLCIVEWFNNELQVC 239
D++ + +NN+ E TI ++G+S+ +V + +N+ C
Sbjct: 216 DLDAIFLNNNRFESTIPETIGKSTASVVTFAHNKFSGC 253
>At1g24360.1 68414.m03072 3-oxoacyl-[acyl-carrier protein]
reductase, chloroplast / 3-ketoacyl-acyl carrier protein
reductase identical to 3-oxoacyl-[acyl-carrier protein]
reductase SP:P33207 from [Arabidopsis thaliana]
Length = 319
Score = 28.3 bits (60), Expect = 3.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = -2
Query: 254 ATDTSTNLKFVVKPFDNTQATSSNGGVYSSFSLIVTLV*SIDVILAVEVTKVAICTDAA 78
ATD +K + + +N G+ LI D ++A+ +T V +CT AA
Sbjct: 138 ATDVDAMMKTALDKWGTIDVVVNNAGITRDTLLIRMKQSQWDEVIALNLTGVFLCTQAA 196
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 27.9 bits (59), Expect = 4.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 126 DVNRLH*SNNQGEGTIYSSVGRSSLCIVEWFNNELQVC 239
D++ + +NN+ E I ++G+S +V + NN+ C
Sbjct: 203 DLDAIFLNNNRFESVIPGTIGKSKASVVTFANNKFSGC 240
>At5g10600.1 68418.m01227 cytochrome P450 family protein similar to
Cytochrome P450 91A1 (SP:Q9FG65) {Arabidopsis thaliana}
; cytochrome P450, Helianthus tuberosus, EMBL:HTCYP81L
Length = 516
Score = 27.5 bits (58), Expect = 5.7
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = -3
Query: 130 TSFLQSRSPKLPSVPTP 80
T FL S++PKLP PTP
Sbjct: 36 TKFLWSQNPKLPPSPTP 52
>At2g41540.2 68415.m05134 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 313 DAKLVEIGGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPW 453
+AK ++ G + + +K+ + +LL +DP + GAG W
Sbjct: 6 EAKSLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAW 52
>At2g41540.1 68415.m05133 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein weak similarity to
SP|P46919 Glycerol-3-phosphate dehydrogenase [NAD(P)+]
(EC 1.1.1.94) {Bacillus subtilis}; contains Pfam profile
PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 462
Score = 27.1 bits (57), Expect = 7.5
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 313 DAKLVEIGGPPYLVPQVKRDKIYDLAKLLEHLNRDPAFLAGAGAGPW 453
+AK ++ G + + +K+ + +LL +DP + GAG W
Sbjct: 6 EAKSLQSNGSVHHIGLNLEEKLDEFRRLLGKSEKDPLRIVSVGAGAW 52
>At4g09810.1 68417.m01610 transporter-related low similarity to
UDP-sugar transporter [Drosophila melanogaster]
GI:14971008, UDP-glucuronic acid transporter [Homo
sapiens] GI:11463949
Length = 335
Score = 26.6 bits (56), Expect = 9.9
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 10 IPQYYIIKTSDKMSLSLLLVFGYAASVQMATLV 108
+ QYY+ K SLS + G+ A Q ATL+
Sbjct: 169 LQQYYVHYLQRKYSLSSFNLLGHTAPAQAATLL 201
>At3g23685.1 68416.m02978 F-box family protein contains TIGR01640:
F-box protein interaction domain
Length = 330
Score = 26.6 bits (56), Expect = 9.9
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 72 WLRGVGTDGNFGDLDCKNDV 131
+LRG+ G+FGD +C+ D+
Sbjct: 272 YLRGLDLVGDFGDQECRTDL 291
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 26.6 bits (56), Expect = 9.9
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 6/83 (7%)
Frame = +1
Query: 109 TSTARMTSIDYTKVTIKEKELYT------PPLDEVACVLSNGLTTNFKFVEVSVADSPDL 270
T ++ M +D +K E+ T PP D LSN + T+ +S +
Sbjct: 1499 TGSSNMVDVDNASSLVKTGEIATLERQSKPPSDSSTSKLSNAIATSSGKCALSYSTDHLT 1558
Query: 271 TEPPYYLKSPGLTGDAKLVEIGG 339
T P + +G+A GG
Sbjct: 1559 TGLPESIMDSATSGEANFPHSGG 1581
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,360,862
Number of Sequences: 28952
Number of extensions: 242275
Number of successful extensions: 710
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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